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        "author": "Ekeyme Mo",
        "author_email": "ekeyme@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Developers",
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3 :: Only",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "bio-pm\n======\n\n.. image:: https://img.shields.io/pypi/v/bio-pm.svg\n    :target: https://pypi.python.org/pypi/bio-pm\n    :alt: Latest PyPI version\n\n.. image:: https://travis-ci.org/ekeyme/bio-pm.png\n   :target: https://travis-ci.org/ekeyme/bio-pm\n   :alt: Latest Travis CI build status\n\nA point mutation analyzing tool for nucleotide sequence\n\nInstallation\n------------\n\nInstall through pip::\n\n    pip install bio-pm\n\nOr manually (assuming all required modules are installed on your system)::\n\n    python ./setup.py install\n\n\nRequirements\n^^^^^^^^^^^^\n\n* Python >= 2.7\n* biopython\n\nExamples\n--------\n\nAnalyze point mutation status using ``pm.analyze(seq, stdseq, translate=True)``\n^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n\n.. code-block:: python\n\n    >>> import pm\n    >>>\n    >>> stdseq = 'ATGGGCGC'\n    >>> seq_with_gap = 'ATGGGCG-C'\n    >>> pm.analyze(seq_with_gap, stdseq)\n    <pm.status.NA object with: gaps=1, nt_pm=1, aa_pm=0, stdseq='ATGGGCGC'>\n    >>> \n\nQuickly compare between ``pm.status`` objects\n^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n\n``p.status`` objects with same stdseqs have their internal order. That is ``Y > Conserved >\nPM > NA``.\n\n.. code-block:: python\n\n    >>> import pm\n    >>>\n    >>> stdseq = \"ATGGGCGCT\"\n    >>> seq_without_pm = 'ATGGGCGCT'\n    >>> seq_conserved = \"ATGGGCGCC\"\n    >>> seq_with_pm = 'ATGGGCGAT'\n    >>> status_Y = pm.analyze(seq_without_pm, stdseq)\n    >>> status_Conserved = pm.analyze(seq_conserved, stdseq)\n    >>> status_PM = pm.analyze(seq_with_pm, stdseq)\n    >>>\n    >>> status_Y > status_Conserved > status_PM\n    True\n    >>>\n\nHelp generate HGVS-like mutation format\n^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n\n*Codes continues from* ``Quickly compare the point mutation status objects``\n\n.. code-block:: python\n\n    >>> from pm.pattern import mutant_to_str\n    >>>\n    >>> status_PM.pattern\n    <pm.pattern.TranslatedPattern object at 0x2b03c9cfdc18>\n    >>>\n    >>> for nt_pm, aa_pm in status_PM.pattern.list():\n    ...     print(mutant_to_str(*nt_pm) + '|' + mutant_to_str(*aa_pm))\n    ...\n    8C>A|3A>D\n\nLicence\n-------\n\nMIT licensed. See the bundled `LICENSE <https://github.com/ekeyme/bio-pm/blob/master/LICENSE>`_ file for more details.\n\nAuthors\n-------\n\n`bio-pm` was written by `Ekeyme Mo <ekeyme@gmail.com>`_.",
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        "license": "MIT",
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