{ "info": { "author": "M. Cyrus Maher", "author_email": "cyrusmaher@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "Ortholog detection (OD) is a critical first step for a variety of comparative genomic and phylogenetic inference tasks. In general, existing OD methods can be classified as tree-based, graph-based, or a hybrid of the two. Comparative performance between these approaches varies by dataset, however, frustrating attempts to identify a single best method. In contrast, MOSAIC improves ortholog detection by leveraging complementary between diverse OD methods. The result is striking gains in the number of detected orthologs relative to existing approaches, while simultaneously maintaining or improving functional-, phylogenetic-, and sequence identity-based measures of ortholog quality.", "description_content_type": null, "docs_url": "https://pythonhosted.org/bio-MOSAIC/", "download_url": "https://github.com/cyrusmaher/mosaic", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/cyrusmaher/mosaic", "keywords": "Multiple Sequence Alignments; Evolution; Bioinformatics", "license": "The MIT License (MIT)\r\n\r\nCopyright (c) 2013 M. Cyrus Maher\r\n\r\nPermission is hereby granted, free of charge, to any person obtaining a copy\r\nof this software and associated documentation files (the \"Software\"), to deal\r\nin the Software without restriction, including without limitation the rights\r\nto use, copy, modify, merge, publish, distribute, sublicense, and/or sell\r\ncopies of the Software, and to permit persons to whom the Software is\r\nfurnished to do so, subject to the following conditions:\r\n\r\nall copies or substantial portions of the Software.\r\n\r\nThe above copyright notice and this permission notice shall be included in\r\nTHE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\r\nFITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\r\nAUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\r\nLIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\r\nOUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\r\nTHE SOFTWARE.", "maintainer": "M. Cyrus Maher", "maintainer_email": "cyrusmaher@gmail.com", "name": "bio-MOSAIC", "package_url": "https://pypi.org/project/bio-MOSAIC/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/bio-MOSAIC/", "project_urls": { "Download": "https://github.com/cyrusmaher/mosaic", "Homepage": "https://github.com/cyrusmaher/mosaic" }, "release_url": "https://pypi.org/project/bio-MOSAIC/1.0/", "requires_dist": null, "requires_python": null, "summary": "https://github.com/cyrusmaher/mosaic", "version": "1.0" }, "last_serial": 868351, "releases": { "1.0": [ { "comment_text": "", "digests": { "md5": "c7746cdf1d42a7d3900dd83daca7a5a9", "sha256": "082db498c680556e22dda923618d09281bae2152b27fab5b05ab9c36960c91d9" }, "downloads": -1, "filename": "bio-MOSAIC-1.0.tar.gz", "has_sig": false, "md5_digest": "c7746cdf1d42a7d3900dd83daca7a5a9", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 8888, "upload_time": "2013-08-26T01:14:36", "url": "https://files.pythonhosted.org/packages/26/cc/a8c51b5375a3e71c2778e43c72718cd7c3d79e666157245a7f2f03a63db5/bio-MOSAIC-1.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "c7746cdf1d42a7d3900dd83daca7a5a9", "sha256": "082db498c680556e22dda923618d09281bae2152b27fab5b05ab9c36960c91d9" }, "downloads": -1, "filename": "bio-MOSAIC-1.0.tar.gz", "has_sig": false, "md5_digest": "c7746cdf1d42a7d3900dd83daca7a5a9", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 8888, "upload_time": "2013-08-26T01:14:36", "url": "https://files.pythonhosted.org/packages/26/cc/a8c51b5375a3e71c2778e43c72718cd7c3d79e666157245a7f2f03a63db5/bio-MOSAIC-1.0.tar.gz" } ] }