{ "info": { "author": "Yunhui Ge, Robert M. Raddi, Vincent A. Voelz", "author_email": "vvoelz@gmail.com", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: MacOS", "Operating System :: Unix", "Programming Language :: Python :: 2.7", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Chemistry" ], "description": "BICePs - Bayesian Inference of Conformational Populations\n=========================================================\n\nThe BICePs algorithm (Bayesian Inference of Conformational Populations)\nis a statistically rigorous Bayesian inference method to reconcile\ntheoretical predictions of conformational state populations with sparse\nand/or noisy experimental measurements and objectively compare different\nmodels. Supported experimental observables include: \n\n- [NMR nuclear Overhauser effect (NOE)](https://en.wikipedia.org/wiki/Nuclear_Overhauser_effect). \n\n- [NMR chemical shifts](https://en.wikipedia.org/wiki/Chemical_shift) (`HA`,`NH`, `CA` and `N`). \n\n- [J couplings](https://en.wikipedia.org/wiki/J-coupling) (both small molecules and amino acids) \n\n- [Hydrogen--deuterium exchange (HDX)](https://en.wikipedia.org/wiki/Hydrogen\u2013deuterium_exchange).\n\nCitation [![DOI for Citing BICePs](https://img.shields.io/badge/DOI-10.1021.acs.jpcb.7b11871-green.svg)](http://doi.org/10.1021/acs.jpcb.7b11871)\n\n### Check our [BICePs website](https://biceps.readthedocs.io/en/latest/) for more details!\n\n### Please check out the [theory of **BICePs**](./BICePs_2.0/markdown/Theory.ipynb) to learn more.\n\nInstallation (in progress)\n==========================\n\n\n\n\nBICePs supports Python 2.7 or Python 3.4+ (coming soon) on Mac, Linux,\nand Windows.\n\n\nDependencies of BICePs\n----------------------\n\n> - Pymbar \\--\\> 3.0 or later\n> - MDTraj \\--\\> 1.9 or later\n> - Matplotlib \\--\\> 1.5.1 or later\n> - Numpy \\--\\> 1.14.0 or later\n\n-------------------------------------------\n\n\n### View [the workflow of BICePs](./BICePs_2.0/markdown/workflow.md).\n\n### BICePs is research software. If you make use of BICePs in scientific publications, please cite it.\n\n# To get started, see [BICePs_2.0](https://github.com/vvoelz/biceps/tree/master/BICePs_2.0) for the latest version of BICePs.\n\n\n\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://biceps.readthedocs.io/en/latest/index.html", "keywords": "", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "biceps", "package_url": "https://pypi.org/project/biceps/", "platform": "Mac OS-X", "project_url": "https://pypi.org/project/biceps/", "project_urls": { "Documentation": "https://biceps.readthedocs.io/en/latest/index.html", "Github": "https://github.com/vvoelz/biceps", "Homepage": "https://biceps.readthedocs.io/en/latest/index.html" }, "release_url": "https://pypi.org/project/biceps/2.0b4/", "requires_dist": [ "cython (>=0.28)", "numpy (>=1.7.0)", "mdtraj (>=1.5.0)", "pymbar", "matplotlib", "PyYAML" ], "requires_python": ">=2.7", "summary": "BICePs", "version": "2.0b4" }, "last_serial": 5667839, "releases": { "2.0b3": [ { "comment_text": "", "digests": { "md5": "6ce699b8027ed9cd25adf5d37eff79ed", "sha256": "728f21d9f6c515639bd72151cc0ee026aafe5eba423fc7867d92a95cbbbe5411" }, "downloads": -1, "filename": "biceps-2.0b3-py2-none-any.whl", "has_sig": false, "md5_digest": "6ce699b8027ed9cd25adf5d37eff79ed", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": ">=2.7", "size": 53378, "upload_time": "2019-07-26T15:37:20", "url": "https://files.pythonhosted.org/packages/da/80/1d4da37b6ba8c88920c1ad6bba1c5027e48584869b522f4ce36269909123/biceps-2.0b3-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "73e068549e0d8c2b1cd8d19596fafa7d", "sha256": "b308be1005ec7abfff677dc05efa51fc41093874eb2d6d189acdf68f8d4134ef" }, "downloads": -1, "filename": "biceps-2.0b3.tar.gz", "has_sig": false, "md5_digest": "73e068549e0d8c2b1cd8d19596fafa7d", "packagetype": "sdist", "python_version": "source", "requires_python": ">=2.7", "size": 41566, "upload_time": "2019-07-26T15:37:21", "url": "https://files.pythonhosted.org/packages/0e/a3/e7e455f6c8d3f055e1fc0230ffb2549278363fdd252727afdc00ede4c84b/biceps-2.0b3.tar.gz" } ], "2.0b4": [ { "comment_text": "", "digests": { "md5": "830a090e8536bed5581c5425d81da570", "sha256": "3a5171ed6c065b107f5a73d3a579ebbd2755e904baef38b1a8d4702c727ec93c" }, "downloads": -1, "filename": "biceps-2.0b4-py2-none-any.whl", "has_sig": false, "md5_digest": "830a090e8536bed5581c5425d81da570", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": ">=2.7", "size": 56836, "upload_time": "2019-08-12T17:52:52", "url": "https://files.pythonhosted.org/packages/dc/d2/ea177a1dbce6e3a311e4a2526b349fad56fc6ed46084db3f9333f1fffee2/biceps-2.0b4-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "fae3654a8be2c9469cf7f39707d0c699", "sha256": "8e6987daf7bccf37934ce81942f93e10bb8162578d9a1a0cdef321f9e5852692" }, "downloads": -1, "filename": "biceps-2.0b4.tar.gz", "has_sig": false, "md5_digest": "fae3654a8be2c9469cf7f39707d0c699", "packagetype": "sdist", "python_version": "source", "requires_python": ">=2.7", "size": 44634, "upload_time": "2019-08-12T17:52:54", "url": "https://files.pythonhosted.org/packages/46/1b/a93d22bf9cce5911604a42cf7b7355b4088a126d5c4c731e6f77c4d4af88/biceps-2.0b4.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "830a090e8536bed5581c5425d81da570", "sha256": "3a5171ed6c065b107f5a73d3a579ebbd2755e904baef38b1a8d4702c727ec93c" }, "downloads": -1, "filename": "biceps-2.0b4-py2-none-any.whl", "has_sig": false, "md5_digest": "830a090e8536bed5581c5425d81da570", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": ">=2.7", "size": 56836, "upload_time": "2019-08-12T17:52:52", "url": "https://files.pythonhosted.org/packages/dc/d2/ea177a1dbce6e3a311e4a2526b349fad56fc6ed46084db3f9333f1fffee2/biceps-2.0b4-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "fae3654a8be2c9469cf7f39707d0c699", "sha256": "8e6987daf7bccf37934ce81942f93e10bb8162578d9a1a0cdef321f9e5852692" }, "downloads": -1, "filename": "biceps-2.0b4.tar.gz", "has_sig": false, "md5_digest": "fae3654a8be2c9469cf7f39707d0c699", "packagetype": "sdist", "python_version": "source", "requires_python": ">=2.7", "size": 44634, "upload_time": "2019-08-12T17:52:54", "url": "https://files.pythonhosted.org/packages/46/1b/a93d22bf9cce5911604a42cf7b7355b4088a126d5c4c731e6f77c4d4af88/biceps-2.0b4.tar.gz" } ] }