{
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        "author": "Tommaso Leonardi",
        "author_email": "tom@tleo.io",
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        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 3.2",
            "Programming Language :: Python :: 3.3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6"
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        "description": "[![Build Status](https://travis-ci.org/tleonardi/bedparse.svg?branch=master)](https://travis-ci.org/tleonardi/bedparse)\n[![Docs Status](https://readthedocs.org/projects/bedparse/badge/?version=master&style=flat)](https://bedparse.readthedocs.io/en/master/)\n[![JOSS Status](http://joss.theoj.org/papers/22763a3b37fde13e548e884edd3221fa/status.svg)](http://joss.theoj.org/papers/22763a3b37fde13e548e884edd3221fa)\n[![License: MIT](https://img.shields.io/badge/License-MIT-brightgreen.svg)](https://opensource.org/licenses/MIT)\n\n# Bedparse\n\n![](docs/bedparse.svg)\n\nBedparse is a simple python module and CLI tool to perform common operations on BED files.\n\nIt offers 11 sub-commands that implement the following functionality:\n* `filter`: Filtering of transcripts based on annotations\n* `join`: Joining of annotation files based on transcript names\n* `gtf2bed`: Conversion from GTF to BED format\n* `convertChr`: Conversion from UCSC to Ensembl chromosome names (and viceversa)\n* `bed12tobed6`: Conversion from bed12 to bed6\n* `promoter`: Promoter reporting\n* `introns`: Intron reporting\n* `cds`: CDS reporting\n* `3pUTR` and `5pUTR`: UTR reporting \n* `validateFormat`: Check that the file conforms with the BED format\n\n## Installation\n\nInstalling is as simple as:\n\n```\npip install bedparse\n```\n\n## Basic usage\n\nThe basic syntax in the form: `bedparse subcommand [parameters]`.\n\nFor a list of all subcommands and a brief explanation of what they do, use: `bedparse --help`.\n\nFor a detailed explanation of each subcommand and a list of its parameters, use the `--help` option after the subcommand's name, e.g.: `bedparse promoter --help`\n\n## Documentation\n\nOur documentation is hosted on [Read the Docs](https://bedparse.readthedocs.io/en/latest/).\n\nWe also have a short [tutorial](https://bedparse.readthedocs.io/en/latest/Tutorial.html) to guide you through the basic functions.\n\n\n\n",
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