{ "info": { "author": "Wang Jianghao", "author_email": "haozi.vv@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Console", "Intended Audience :: Developers", "Intended Audience :: System Administrators", "License :: OSI Approved :: MIT License", "Operating System :: POSIX :: Linux", "Programming Language :: Python", "Programming Language :: Python :: 3" ], "description": "# bcl2fq-local\n\nA bcl2fastq and qc wrapper\n\n# Install\n```bash\npip install bcl2fq-local\n```\nor \n\n```bash\ngit clone URL\ncd bcl2fq-local\npython setup.py install\n\n```\n\n# Usage\nFor Bcl2fastq\n```text\nusage: bcl2fq-local [-h] [-i DirPath] [-o DirPath] [--sample-sheet File]\n [--mismatch N] [--process N] [--io-process Num]\n [--binpath File] [--dry-run] [--mask MASK]\n [--mask-reads N] [--mask-index N] [-v]\n\nA bcl2fastq wrapper\n\noptional arguments:\n -h, --help show this help message and exit\n -i DirPath Sequence run dir\n -o DirPath Output dir for fastq files\n --sample-sheet File Using custom sample sheet file\n --mismatch N Mismatch for barcode, default: 1\n --process N Process number for demultiplexing and processing\n --io-process Num Process number for reading and writing\n --binpath File bcl2fastq binary file path\n --dry-run Only print the cmd without running it\n --mask MASK using self defined mask\n --mask-reads N set reads mask base count, default is: 0,0\n --mask-index N set index mask base count, default is: 0,0\n -v, --version show version info\n```\n\nFor QC\n```text\nusage: qc-local [-h] [-r RAW_DIR] [-c CLEAN_DIR] [-q QC_DIR] [-2 ADAPTER_DIR]\n [-t THREADS] [--paired-end] [-v]\n\nA qc wrapper\n\noptional arguments:\n -h, --help show this help message and exit\n -r RAW_DIR Raw reads dir input\n -c CLEAN_DIR Dir to write output clean reads\n -q QC_DIR Dir to write qc info file, default: /QC\n -2 ADAPTER_DIR Dir to write removed reads, default: /002\n -t THREADS Threads number for parallel, default:8\n --paired-end Use qc for paired end reads\n -v, --version Show version info\n```\n\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/seahurt/bcl2fq-local", "keywords": "", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "bcl2fq-local", "package_url": "https://pypi.org/project/bcl2fq-local/", "platform": "CentOS 7.0+", "project_url": "https://pypi.org/project/bcl2fq-local/", "project_urls": { "Homepage": "https://github.com/seahurt/bcl2fq-local" }, "release_url": "https://pypi.org/project/bcl2fq-local/0.2.0/", "requires_dist": [ "xmltodict" ], "requires_python": "", "summary": "Bcl2fastq wrapper", "version": "0.2.0" }, "last_serial": 5526455, "releases": { "0.1.1": [ { "comment_text": "", "digests": { "md5": "a7d29fa42f109fa76d1a865e6708cee0", "sha256": "6abe994b52f7fe29cce3e9fb5929de4960b36e60672189ebfe123774ecda65bc" }, "downloads": -1, 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