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"description": "|Documentation| |Test results| |Test coverage| |Code analysis| |License|\n|Analytics|\n\n``BcForms``: toolkit for concretely describing macromolecular complexes\n=======================================================================\n\n``BcForms`` is a toolkit for concretely describing the molecular\nstructure (atoms and bonds) of macromolecular complexes, including\nnon-canonical monomeric forms, circular topologies, and crosslinks.\n\n``BcForms`` encompasses five tools: \\* A grammar for concretely\ndescribing subunit composition and interchain crosslinks of\nbiocomplexes. See the\n`documentation `__ for more\ninformation. For example, the following text represents a homodimer\ncomplex with a disulfide bond between the first monomer in the first\nsubunit and the first monomer in the second subunit.\n``complex: 2 * sub_c | x-link: [ l-bond-atom: sub_c(1)-1S11 | l-displaced-atom: sub_c(1)-1H11 | r-bond-atom: sub_c(2)-1S11 | r-displaced-atom: sub_c(2)-1H11 ]``\n\n::\n\n This concrete representation enables the `BcForms` software tools to calculate properties of biocomplexes when the subunits are concretely defined.\n\n- Tools for calculating properties of biocomplexes including their\n structure, chemical formulae, molecular weights, and charges.\n- A web app: https://bcforms.org\n- A JSON REST API: https://bcforms.org/api\n- A command line interface. See the\n `documentation `__\n for more information.\n- A Python API. See the\n `documentation `__\n for more information.\n\nInstallation\n------------\n\n1. Install dependencies\n\n- `Open Babel `__\n- `Pip `__ >= 19.0\n- `Python `__ >= 3.6\n\n2. Install the latest release from PyPI ``pip install bcforms.git[all]``\n3. Install the latest revision from GitHub\n ``pip install git+https://github.com/KarrLab/bcforms.git#egg=bcforms[all]``\n\nDocumentation\n-------------\n\nPlease see the `API documentation `__.\n\nLicense\n-------\n\nThe package is released under the `MIT license `__.\n\nDevelopment team\n----------------\n\nThis package was developed by the `Karr Lab `__\nat the Icahn School of Medicine at Mount Sinai in New York, USA.\n\n- `Jonathan Karr `__\n- `Xiaoyue Zheng `__\n\nQuestions and comments\n----------------------\n\nPlease contact the `Karr Lab `__ with any\nquestions or comments.\n\n.. |Documentation| image:: https://readthedocs.org/projects/bcforms/badge/?version=latest\n :target: https://docs.karrlab.org/bcforms\n.. |Test results| image:: https://circleci.com/gh/KarrLab/bcforms.svg?style=shield\n :target: https://circleci.com/gh/KarrLab/bcforms\n.. |Test coverage| image:: https://coveralls.io/repos/github/KarrLab/bcforms/badge.svg\n :target: https://coveralls.io/github/KarrLab/bcforms\n.. |Code analysis| image:: https://api.codeclimate.com/v1/badges/c8f15ac1e50c27ca44cc/maintainability\n :target: https://codeclimate.com/github/KarrLab/bcforms\n.. |License| image:: https://img.shields.io/github/license/KarrLab/bcforms.svg\n :target: LICENSE\n.. |Analytics| image:: https://ga-beacon.appspot.com/UA-86759801-1/bcforms/README.md?pixel\n\n\n\n",
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