{
    "info": {
        "author": "Richard Teague",
        "author_email": "rteague@umich.edu",
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        "classifiers": [
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
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        "description": "# eddy - Extracting Disk DYnamics\n\n[![status](http://joss.theoj.org/papers/2868c5ad4b6405eba1aaf1cd8ea53274/status.svg)](http://joss.theoj.org/papers/2868c5ad4b6405eba1aaf1cd8ea53274)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1440052.svg)](https://doi.org/10.5281/zenodo.1440052)\n<a href=\"http://ascl.net/1901.010\"><img src=\"https://img.shields.io/badge/ascl-1901.010-blue.svg?colorB=262255\" alt=\"ascl:1901.010\" /></a>\n[![Documentation Status](https://readthedocs.org/projects/eddy/badge/?version=latest)](https://eddy.readthedocs.io/en/latest/?badge=latest)\n\n`eddy` is a suite of Python tools to recover precise rotation profiles of protoplanetary disks from Doppler shifted line emission. `eddy` makes fitting of first moment maps and the inference of a rotation velocity from an annulus of spectra a breeze.\n\n## Installation\n\nTo install the `eddy` packge, first clone the directory, then in the main directory,\n\n```\npip install .\n```\n\nThe only real dependencies for this are `numpy`, `scipy`, `matplotlib`, [`emcee`](https://github.com/dfm/emcee), at least v3.0 or higher, and [`corner`](https://github.com/dfm/corner.py). If you want to run the Gaussian Process method you will also need [`celerite`](https://github.com/dfm/celerite) which can be easily installed if you follow their [installation guide](https://celerite.readthedocs.io/en/stable/python/install/).\n\nIf things have installed correctly you should be able to run the [Jupyter Notebooks](https://github.com/richteague/eddy/tree/master/docs) with no errors. If something goes wrong, please [open an issue](https://github.com/richteague/eddy/issues/new).\n\nSomething which is `pip` installable is currently work in progress.\n\n## Useage\n\nFor guides on how to use `eddy` you will find extensive examples in the [documents](https://github.com/richteague/eddy/tree/master/docs).\n\nIn brief, `fit_annulus` contains the functionality to infer the rotation profile from an annulus of Doppler shifted spectra, as discussed in [Teague et al. (2018a,](https://ui.adsabs.harvard.edu/#abs/2018ApJ...860L..12T/abstract)[b)](https://ui.adsabs.harvard.edu/#abs/2018ApJ...868..113T/abstract). Functions to fit the rotation map (we shameless recommend [bettermoments](https://github.com/richteague/bettermoments) to make these), including a flared surface geometry can be found in `fit_cube`. This also contains the functionality to deproject images using the geometrical properties of the best fit model.\n\n## Attribution\n\nIf you use `eddy` as part of your research, please cite the [JOSS article](http://joss.theoj.org/papers/10.21105/joss.01220):\n\n```latex\n@article{eddy,\n    doi = {10.21105/joss.01220},\n    url = {https://doi.org/10.21105/joss.01220},\n    year = {2019},\n    month = {feb},\n    publisher = {The Open Journal},\n    volume = {4},\n    number = {34},\n    pages = {1220},\n    author = {Richard Teague},\n    title = {eddy},\n    journal = {The Journal of Open Source Software}\n}\n```\n\nA full list of citations including dependencies can be found on the [citations](./docs/citations.md) page.\n\n\n",
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