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"author": "Helena Rasche;Anthony Bretaudeau",
"author_email": "hxr@hx42.org",
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"description": "Apollo API Library\n==================\n\n.. image:: https://travis-ci.org/galaxy-genome-annotation/python-apollo.svg?branch=master\n :target: https://travis-ci.org/galaxy-genome-annotation/python-apollo\n\n.. image:: https://readthedocs.org/projects/python-apollo/badge/?version=latest\n :target: http://python-apollo.readthedocs.io/en/latest/?badge=latest\n :alt: Documentation Status\n\nApollo is a Python library for interacting with\n`Apollo `__\n\nExamples\n--------\n\n.. code:: python\n\n from apollo import ApolloInstance\n wa = ApolloInstance('https://fqdn/apollo', 'jane.doe@fqdn.edu', 'password')\n\n orgs = wa.organisms.add_organism(\n \"Yeast\",\n \"/path/to/jbrowse/data\",\n genus='Saccharomyces',\n species='cerevisiae',\n public=False\n )\n\n # Give Apollo a second to process the uploaded organism.\n time.sleep(1)\n\n # Then add yourself to permission list\n data = wa.users.update_organism_permissions(\n \"jane.doe@fqdn.edu\",\n \"Yeast\",\n write=True,\n export=True,\n read=True,\n )\n\nOr with the new Arrow client:\n\n.. code-block:: shell\n\n $ arrow groups create_group university\n {\n \"publicGroup\": false,\n \"class\": \"org.bbop.apollo.UserGroup\",\n \"name\": \"university\",\n \"users\": null,\n \"id\": 558319\n }\n # THEN\n $ arrow users get_users | \\\n jq '.[] | select(.username | contains(\"@tamu.edu\")) | .username' | \\\n xargs -n1 arrow users add_to_group university\n # OR\n $ arrow users get_users | \\\n jq '.[] | select(.username | contains(\"@tamu.edu\")) | .username' | \\\n paste -s -d',' | \\\n xargs arrow group update_membership 558319 --users\n\nHistory\n-------\n\n- 3.1\n - Added user activate/inactivate\n - Added get_creator for user, group and organisms\n - Added omitEmptyOrganisms to get_users\n - Added support for group admins\n - Added support for bulk group creation/deletion\n - Repaired GFF3/Fasta downloading\n- 3.0.4\n - `Fixed bug `__ in deleteFeatures (Thanks `@NeillGibson `__)\n- 3.0.3\n - findAllOrganisms works correctly, client side filtering no longer necessary.\n- 3.0.2\n - Patch a bug discovered in io.write, thanks Morgan!\n- 3.0\n - \"Arrow\" CLI utility\n - More pythonic API and many workarounds for Apollo bugs or oddities\n - Complete package restructure\n - Nearly all functions renamed\n- 2.0\n - Galaxy Functions\n - TTL Cache to work around Galaxy's behaviour\n - Status and Canned* Clients from `@abretaud `__\n- 1.0\n - Initial release\n\nLicense\n-------\n\nAvailable under the MIT License\n\n\n\nSupport\n-------\n\nThis material is based upon work supported by the National Science Foundation under Grant Number (Award 1565146)",
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