{
    "info": {
        "author": "Josh Granek",
        "author_email": "joshua.granek@duke.edu",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "AIMHII\n=======================\n\nThis package provides software for identifying the genome insertion points random mutants generated by insertional mutagenesis, which have been sequenced as a pool.\n\nThe package will install two executables: aimhii and extract_chimeras.\n\naimhii will run a full analysis starting from sequence data (a FASTQ file), genome sequence, and insert sequence.  extract_chimeras just runs the last step of this analysis, assuming you already have a BAM file and a concatenated genome-insert sequence.\n\nFor details see the project website https://github.com/granek/aimhii/\n\n\n\nChanges in v0.5.5: Added filter_bam.filter_chimeric_reads to pipeline extract only putative junction reads from BWA output. Shifted to hosting on github.\n\nChanges in v0.5.4: Added --plot option to aimhii and shifted a few remaining \"prints\" to logging\n\nChanges in v0.5.3: Shifted debugging prints to logging and added scripts for generating synthetic sequences\n\nChanges in v0.5.2: Lowered pysam version requirement to allow installation using apt-get in Debian v8.\n\nChanges in v0.5.1: Fixed problem with missing DESCRIPTION.rst.",
        "description_content_type": null,
        "docs_url": null,
        "download_url": null,
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/granek/aimhii/",
        "keywords": null,
        "license": "The MIT License (MIT)",
        "maintainer": null,
        "maintainer_email": null,
        "name": "aimhii",
        "package_url": "https://pypi.org/project/aimhii/",
        "platform": "UNKNOWN",
        "project_url": "https://pypi.org/project/aimhii/",
        "project_urls": {
            "Homepage": "https://github.com/granek/aimhii/"
        },
        "release_url": "https://pypi.org/project/aimhii/0.5.5/",
        "requires_dist": [
            "numpy (>=1.8.1)",
            "biopython (>=1.64)",
            "matplotlib (>=1.3.1)",
            "pysam (>=0.9.0)",
            "HTSeq (>=0.6.1)"
        ],
        "requires_python": null,
        "summary": "A pipeline for mapping insertion mutants from whole genome shotgun data",
        "version": "0.5.5"
    },
    "last_serial": 2103064,
    "releases": {
        "0.5.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "66feed1c91ca53594e891e97472fc164",
                    "sha256": "b4a0b51eb00503fd5cf28d679dfe6eeb610609e19a4251b300e54b0468073af7"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.0-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "66feed1c91ca53594e891e97472fc164",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 17577,
                "upload_time": "2015-04-24T19:53:40",
                "url": "https://files.pythonhosted.org/packages/15/f5/6d6f9e74d4bef893651ca8eda62d05c3384ec0415ad12e59a6650aa9d345/aimhii-0.5.0-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "3c27b5fd38cc78b2deec65c962452ecd",
                    "sha256": "a5ebba481173c454cb2c734e1bf2ea10c3dbcafe1a6b85c42f857a3dca04e16c"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.0.tar.gz",
                "has_sig": false,
                "md5_digest": "3c27b5fd38cc78b2deec65c962452ecd",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 15037,
                "upload_time": "2015-04-24T19:53:43",
                "url": "https://files.pythonhosted.org/packages/d1/87/99ee32ece29dad93c0c46d94d9969dd6deaa812006d38139364623e5726d/aimhii-0.5.0.tar.gz"
            }
        ],
        "0.5.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "94e68d90e96ab1a05c3d2b70907e06ce",
                    "sha256": "8e029cb4389ead0b1807dbc8da7c8c325c48f792785ee25c551af19375494b65"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.1-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "94e68d90e96ab1a05c3d2b70907e06ce",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 17680,
                "upload_time": "2015-04-26T06:32:39",
                "url": "https://files.pythonhosted.org/packages/93/45/f41b81cb872229a6850ca5a83b1ac0d40df166dff8b5a4c362c90ed2f243/aimhii-0.5.1-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "f3de46da9fdcda81ff136d8a353aa904",
                    "sha256": "955cf6f90a357b0ed5b734a48a58644c236271b07741881b924991fdec8e83e6"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.1.tar.gz",
                "has_sig": false,
                "md5_digest": "f3de46da9fdcda81ff136d8a353aa904",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 15111,
                "upload_time": "2015-04-26T06:32:42",
                "url": "https://files.pythonhosted.org/packages/17/b8/b6986eeb2aa236c120078849e123a26bb39e1f1c2d573f892bf2632499a0/aimhii-0.5.1.tar.gz"
            }
        ],
        "0.5.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "ccd032c708e81cba98357681f8d2632b",
                    "sha256": "26150d0750d2666d6222d60bc8420ef8ddf84a6a83cc50fb52b2c787c991ade5"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.2-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "ccd032c708e81cba98357681f8d2632b",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 17786,
                "upload_time": "2015-04-28T15:49:27",
                "url": "https://files.pythonhosted.org/packages/8c/04/2d386afeddd8f975f7df6e7a80cdcfb9bed272126bb8d1406d3afbe44862/aimhii-0.5.2-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "83c84726f0d51d6a10f9e4e96ab2a703",
                    "sha256": "ec8b3d9fd0358e53440fab9b7f5f3d56ec982bd9b000e2d5136b9724f378eaf7"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.2.tar.gz",
                "has_sig": false,
                "md5_digest": "83c84726f0d51d6a10f9e4e96ab2a703",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 15122,
                "upload_time": "2015-04-28T15:49:29",
                "url": "https://files.pythonhosted.org/packages/0c/d4/d6e907fca3bb051d126a5fe59f4a26305fb163d65270bcdbbd87d3678abc/aimhii-0.5.2.tar.gz"
            }
        ],
        "0.5.3": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "2887b10f19c60186a7ec08286ec64f7c",
                    "sha256": "6c8c3970ee6d48a6be91e678408ff96802e16f37c06b3486252ae5b755854353"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.3-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "2887b10f19c60186a7ec08286ec64f7c",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 20531,
                "upload_time": "2015-05-08T04:31:29",
                "url": "https://files.pythonhosted.org/packages/c9/69/ae0ca7768c16d5f7759ced4daa8a8d5ec499ff4b31912b2925bdf9785ecb/aimhii-0.5.3-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "e4519de338dacee4d2548b7e7d5173b2",
                    "sha256": "3531d41c1f012ee36afe50ce5daa6b620f110fbf4f91e29edd7c9321ae6ae95b"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.3.tar.gz",
                "has_sig": false,
                "md5_digest": "e4519de338dacee4d2548b7e7d5173b2",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 16764,
                "upload_time": "2015-05-08T04:31:31",
                "url": "https://files.pythonhosted.org/packages/38/01/9ea23c64f02094605bf85a5de60661a61a4a6af07f5634835520756bd043/aimhii-0.5.3.tar.gz"
            }
        ],
        "0.5.4": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "4dac35ed6028982064afd829eadd2731",
                    "sha256": "6919270cdf038cb2b8acfa96713ce95fc02120579e67c88abfaee522a3e8eb99"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.4-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "4dac35ed6028982064afd829eadd2731",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 22205,
                "upload_time": "2015-05-14T17:32:58",
                "url": "https://files.pythonhosted.org/packages/48/4b/7435004bf0a12f2c958daeb0e88c6c4a4192a5b47c45f9a58c757460199c/aimhii-0.5.4-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "32632887d9371666ef656e280f3aa743",
                    "sha256": "a8a57b4956eb246d38908ecfc6d572f6a71b133249218c12ab03683a2b6a2947"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.4.tar.gz",
                "has_sig": false,
                "md5_digest": "32632887d9371666ef656e280f3aa743",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 17938,
                "upload_time": "2015-05-14T17:33:02",
                "url": "https://files.pythonhosted.org/packages/fc/3a/19da5c881dbb6ebbe45bbad563c5a4e76e89d5edbda82d7ee6de53338ba8/aimhii-0.5.4.tar.gz"
            }
        ],
        "0.5.5": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "e1e66a916145049cc6dd0706604c56e4",
                    "sha256": "0fa24aac7d68d1e9cdbe49e62314ca2954af649974fc519956c055bad5ec8d10"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.5-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "e1e66a916145049cc6dd0706604c56e4",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 22900,
                "upload_time": "2016-05-06T18:38:41",
                "url": "https://files.pythonhosted.org/packages/65/84/4c9a3f3dafc35dafbd54d6181129a8a2aa804bb3c5ccd139b4d969e6acba/aimhii-0.5.5-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "848f2b86a2447df548da113493164496",
                    "sha256": "3d4c4b233f032da247d646b1149b46b098bfd322ff4e586ba03bb74e813b4fa5"
                },
                "downloads": -1,
                "filename": "aimhii-0.5.5.tar.gz",
                "has_sig": false,
                "md5_digest": "848f2b86a2447df548da113493164496",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 17933,
                "upload_time": "2016-05-06T18:38:58",
                "url": "https://files.pythonhosted.org/packages/0c/50/305f452cc52e976730aa47ee06b5ee128e8e93c51b7dd964ef5d93e5ed81/aimhii-0.5.5.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "e1e66a916145049cc6dd0706604c56e4",
                "sha256": "0fa24aac7d68d1e9cdbe49e62314ca2954af649974fc519956c055bad5ec8d10"
            },
            "downloads": -1,
            "filename": "aimhii-0.5.5-py2-none-any.whl",
            "has_sig": false,
            "md5_digest": "e1e66a916145049cc6dd0706604c56e4",
            "packagetype": "bdist_wheel",
            "python_version": "py2",
            "requires_python": null,
            "size": 22900,
            "upload_time": "2016-05-06T18:38:41",
            "url": "https://files.pythonhosted.org/packages/65/84/4c9a3f3dafc35dafbd54d6181129a8a2aa804bb3c5ccd139b4d969e6acba/aimhii-0.5.5-py2-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "848f2b86a2447df548da113493164496",
                "sha256": "3d4c4b233f032da247d646b1149b46b098bfd322ff4e586ba03bb74e813b4fa5"
            },
            "downloads": -1,
            "filename": "aimhii-0.5.5.tar.gz",
            "has_sig": false,
            "md5_digest": "848f2b86a2447df548da113493164496",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 17933,
            "upload_time": "2016-05-06T18:38:58",
            "url": "https://files.pythonhosted.org/packages/0c/50/305f452cc52e976730aa47ee06b5ee128e8e93c51b7dd964ef5d93e5ed81/aimhii-0.5.5.tar.gz"
        }
    ]
}