{ "info": { "author": "Tiziano M\u00fcller", "author_email": "tiziano.mueller@chem.uzh.ch", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Chemistry", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "# AiiDA Gaussian Data Plugin\n\n[![Build Status](https://travis-ci.com/dev-zero/aiida-gaussian-datatypes.svg?branch=develop)](https://travis-ci.com/dev-zero/aiida-gaussian-datatypes) [![codecov](https://codecov.io/gh/dev-zero/aiida-gaussian-datatypes/branch/develop/graph/badge.svg)](https://codecov.io/gh/dev-zero/aiida-gaussian-datatypes) [![PyPI](https://img.shields.io/pypi/pyversions/aiida-gaussian-datatypes)](https://pypi.org/project/aiida-gaussian-datatypes/)\n\n\nPlugin to handle GTO-based basis sets and pseudopotentials and manage them as first-class citizens in AiiDA.\n\n## Commandline usage\n\nAfter the installation, you will get new commands in `verdi data`\n\n```console\n$ verdi data\nUsage: verdi data [OPTIONS] COMMAND [ARGS]...\n\n Inspect, create and manage data nodes.\n\nOptions:\n -h, --help Show this message and exit.\n\nCommands:\n array Manipulate ArrayData objects.\n bands Manipulate BandsData objects.\n cif Manipulation of CIF data objects.\n parameter View and manipulate Dict objects.\n plugins Print a list of registered data plugins or details of\n a...\n remote Managing RemoteData objects.\n structure Manipulation of StructureData objects.\n trajectory View and manipulate TrajectoryData instances.\n upf Manipulation of the upf families.\n gaussian.basisset Manage basis sets for GTO-based codes\n gaussian.pseudo Manage Pseudopotentials for GTO-based codes\n\n$ verdi data gaussian.basisset\nUsage: verdi data gaussian.basisset [OPTIONS] COMMAND [ARGS]...\n\n Manage basis sets for GTO-based codes\n\nOptions:\n -h, --help Show this message and exit.\n\nCommands:\n dump Print specified Basis Sets\n import Add a basis sets from a file to the database\n list List Gaussian Basis Sets\n\n$ verdi data gaussian.pseudo\nUsage: verdi data gaussian.pseudo [OPTIONS] COMMAND [ARGS]...\n\n Manage Pseudopotentials for GTO-based codes\n\nOptions:\n -h, --help Show this message and exit.\n\nCommands:\n dump Print specified Pseudopotential\n import Add a pseudopotential from a file to the database\n list List Gaussian Pseudopotentials\n```\n\n## Examples\n\n### Import and use Basis Set from CP2K\n\nTo import a specific basis set from a file with basis sets in CP2K's native format, simply use:\n\n```console\n$ verdi data gaussian.basisset import --sym He data/BASIS_MOLOPT\nInfo: 2 Gaussian Basis Sets found:\n\n Nr. Sym Names Tags # Val. e\u207b Version\n----- ----- ----------------------------------------- ------------------------- ----------- ---------\n 1 He SZV-MOLOPT-SR-GTH-q2, SZV-MOLOPT-SR-GTH SZV, MOLOPT, SR, GTH, q2 2 1\n 2 He DZVP-MOLOPT-SR-GTH-q2, DZVP-MOLOPT-SR-GTH DZVP, MOLOPT, SR, GTH, q2 2 1\n\nWhich Gaussian Basis Set do you want to add? ('n' for none, 'a' for all, comma-seperated list or range of numbers): 2\nInfo: Adding Gaussian Basis Set for: He (DZVP-MOLOPT-SR-GTH-q2)... DONE\n\n$ verdi data gaussian.basisset list\nInfo: 1 Gaussian Basis Sets found:\n\nID Sym Names Tags # Val. e\u207b Version\n------------------------------------ ----- ----------------------------------------- ------------------------- ----------- ---------\n4a173d43-b022-4e1e-aca9-c4db51da223b He DZVP-MOLOPT-SR-GTH-q2, DZVP-MOLOPT-SR-GTH DZVP, MOLOPT, SR, GTH, q2 2 1\n```\n\nNotes:\n\n* The command line argument `--sym He` is optional (leaving it away will simply show all available entries)\n* The plugin automatically filters already imported basis sets\n\nTo reference this in a `verdi` script, you can use the following snippet:\n\n```python\nfrom aiida.plugins import DataFactory\n\nBasisSet = DataFactory('gaussian.basisset')\n\nbasis_He = BasisSet.get(element=\"He\", name=\"DZVP-MOLOPT-SR-GTH\")\n\n# the generic way using BasisSet.objects.find(...) works too, of course\n```\n\nNotes:\n\n* You don't have to specify the full name (`DZVP-MOLOPT-SR-GTH-q2`), the shorter name (`DZVP-MOLOPT-SR-GTH`) also works\n\n### Import and use Pseudopotential from CP2K\n\nTo import a specific pseudopotential from a file with pseudopotentials in CP2K's native format, simply use:\n\n```console\n$ verdi data gaussian.pseudo import --sym He data/GTH_POTENTIALS\nInfo: 4 Gaussian Pseudopotentials found:\n\n Nr. Sym Names Tags Val. e\u207b (s, p, d) Version\n----- ----- ------------------------------------------ ------------- ------------------- ---------\n 1 He GTH-BLYP-q2, GTH-BLYP GTH, BLYP, q2 2, 0, 0 1\n 2 He GTH-BP-q2, GTH-BP GTH, BP, q2 2, 0, 0 1\n 3 He GTH-PADE-q2, GTH-LDA-q2, GTH-PADE, GTH-LDA GTH, PADE, q2 2, 0, 0 1\n 4 He GTH-PBE-q2, GTH-PBE GTH, PBE, q2 2, 0, 0 1\n\nWhich Gaussian Pseudopotentials do you want to add? ('n' for none, 'a' for all, comma-seperated list or range of numbers): 4\nInfo: Adding Gaussian Pseudopotentials for: He (GTH-PBE-q2)... DONE\n\n$ verdi data gaussian.pseudo list\nInfo: 1 Gaussian Pseudopotential found:\n\nID Sym Names Tags Val. e\u207b (s, p, d) Version\n------------------------------------ ----- -------------------------------------------- -------------- ------------------- ---------\n5838b0b7-336a-4b97-b76a-e5c42a4e98ac He GTH-PBE-q2, GTH-PBE GTH, PBE, q2 2, 0, 0 1\n```\n\nNotes:\n\n* The command line argument `--sym He` is optional (leaving it away will simply show all available entries)\n* The plugin automatically filters already imported basis sets\n\nTo reference this in a `verdi` script, you can use the following snippet:\n\n```python\nfrom aiida.plugins import DataFactory\n\nPseudopotential = DataFactory('gaussian.pseudo')\n\npseudo_He = Pseudopotential.get(element=\"He\", name=\"GTH-PBE\")\n\n# the generic way using Pseudopotential.objects.find(...) works too, of course\n```\n\nNotes:\n\n* You don't have to specify the full name (`GTH-PBE-q2`), the shorter name (`GTH-PBE`) also works\n\n\n", 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