{ "info": { "author": "Stephan Zevenhuizen", "author_email": "S.J.M.Zevenhuizen@uu.nl", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Intended Audience :: Science/Research", "License :: OSI Approved :: BSD License", "Natural Language :: English", "Operating System :: OS Independent", "Programming Language :: Python :: 2", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Chemistry", "Topic :: Scientific/Engineering :: Information Analysis", "Topic :: Scientific/Engineering :: Physics", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "access2theMatrix is a Python library for accessing Scienta Omicron\n(NanoScience) (NanoTechnology) MATRIX Control System result files.\nScanning Probe Microscopy (SPM) Image data, Single Point Spectroscopy\n(SPS) Curve data and Phase/Amplitude Curve data will be accessed by\nthis library. access2theMatrix is pure Python.\n\nThe library access2theMatrix has the package access2thematrix which in turn\ncontains the module access2thematrix. The class MtrxData in the access2thematrix\nmodule has the methods to open SPM Image, SPS Curve and Phase/Amplitude Curve\nresult files, to select one out of the four possible traces (forward/up,\nbackward/up, forward/down and backward/down) for images and to select one out of\nthe two possible traces (trace, retrace) for curves. Includes method for\nexperiment element parameters overview.\n\nDependencies\n------------\naccess2theMatrix requires the NumPy (http://www.numpy.org) and the six\n(https://pypi.python.org/pypi/six/) library.\n\nInstallation\n------------\nUsing pip::\n\n > pip install access2theMatrix\n\nExample usage\n-------------\nIn this example the MATRIX Control System has stored the acquired data in the\nfolder ``c:\\data``. In addition to the result data files the folder must also\ncontain the result file chain, see the MATRIX Application Manual for SPM.\nThe image file ``Au(111) bbik fe-20151110-112314--3_1.Z_mtrx`` will be opened\nand the ``forward/up`` trace will be selected.\n\n.. code-block:: pycon\n\n >>> import access2thematrix\n >>> mtrx_data = access2thematrix.MtrxData()\n >>> data_file = r'c:\\data\\Au(111) bbik fe-20151110-112314--3_1.Z_mtrx'\n >>> traces, message = mtrx_data.open(data_file)\n >>> traces\n {0: 'forward/up', 1: 'backward/up'}\n >>> im, message = mtrx_data.select_image(traces[0])\n >>>\n\nThe variable ``im`` will contain the data and the metadata of the selected\nimage and the ``im`` object has the initial attributes ``data``, ``width``,\n``height``, ``y_offset``, ``x_offset``, ``angle`` and ``channel_name_and_unit``.\nWe will continue the example by opening de curve file\n``Au(111) bbik fe-20151110-112314--2_1.Aux2(V)_mtrx`` and selecting the\n``retrace`` trace.\n\n.. code-block:: pycon\n\n >>> data_file = r'c:\\data\\Au(111) bbik fe-20151110-112314--2_1.Aux2(V)_mtrx'\n >>> traces, message = mtrx_data.open(data_file)\n >>> traces\n {0: 'trace', 1: 'retrace'}\n >>> cu, message = mtrx_data.select_curve(traces[1])\n >>>\n\nThe variable ``cu`` will contain the data and the metadata of the selected\ncurve and the ``cu`` object has the initial attributes ``data``,\n``referenced_by``, ``x_data_name_and_unit`` and ``y_data_name_and_unit``.\n\nTo get a list and a printable sorted text list of the experiment element\nparameters with their values and units, use the method\n``get_experiment_element_parameters``.\n\nAuthors & affiliations\n----------------------\nStephan J. M. Zevenhuizen [#]_\n\n.. 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