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        "author": "Romain Beucher",
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            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
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            "Programming Language :: Python :: 3.7",
            "Topic :: Software Development :: Build Tools"
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        "description": "\n.. image:: /docs/source/img/logos.png\n    :target: https://www.earthbyte.org/the-basin-genesis-hub\n\nUnderworld Geodynamics project\n==============================\n\n.. image:: http://joss.theoj.org/papers/10.21105/joss.01136/status.svg\n   :target: https://doi.org/10.21105/joss.01136\n\n.. image:: https://zenodo.org/badge/114189389.svg\n    :target: https://zenodo.org/badge/latestdoi/114189389\n    :alt: DOI      \n\n.. image:: https://api.codacy.com/project/badge/Grade/85b5f7736d03441db786549d6e357c9e\n    :target: https://www.codacy.com/app/romainbeucher/UWGeodynamics?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=rbeucher/UWGeodynamics&amp;utm_campaign=Badge_Grade\n    :alt: Codacy\n\n.. image:: https://img.shields.io/pypi/v/uwgeodynamics.svg\n    :target: https://pypi.python.org/pypi/uwgeodynamics\n    :alt: Pip\n\n.. image:: https://readthedocs.org/projects/uwgeodynamics/badge\n    :target: http://uwgeodynamics.readthedocs.org/\n    :alt: Docs\n\n.. image:: https://travis-ci.org/underworldcode/UWGeodynamics.svg?branch=development\n    :target: https://travis-ci.org/underworldcode/UWGeodynamics\n\n.. image:: https://github.com/underworldcode/UWGeodynamics/blob/development/tutorials/images/Tutorial1.gif\n\n.. image:: https://github.com/underworldcode/UWGeodynamics/blob/development/docs/source/img/collision_wedge.gif\n\nThe UWGeodynamics module facilitates prototyping of geodynamics models using Underworld. \nIt can be seen as a set of high-level functions within the Underworld ecosystem.\nIt is a means to quickly get the user into Underworld modelling and assumes very\nlittle knowledge in coding. The module make some assumptions based on how the user\ndefines the boundary conditions and the properties of the materials (rocks, phases).\nIts simplicity comes with a relatively more rigid workflow (compared to the classic Underworld functions).\nHowever, the user can easily break the high level objects and get back to core\nUnderworld function at any step of model design.\n\nThe UWGeodynamics is inspired by the [Lithospheric Modelling Recipe (LMR)](https://github.com/LukeMondy/lithospheric_modelling_recipe) originally developed by\nLuke Mondy, Guillaume Duclaux and Patrice Rey for Underworld 1. \nSome of the naming conventions have been reused to facilitate the transition from LMR.\nThe Rheological libraries is also taken from LMR.\n\nAs we think the low-level interface is more flexible, and in so allows for more complex models,\nwe strongly encourage users to explore and break the High Level functions.\n\nWe hope that the user will naturally move to the low-level functionalities as he\nor her gets more confident, and by doing so will access the wide range of \npossibilities offered by Underworld.\n\n.. image:: /docs/source/img/SandboxCompression.gif\n\nUWGeodynamics and Underworld\n----------------------------\n\n*UWGeodynamics* uses the Underworld_  Application Programming Interface (API).\nBoth projects are supported by The Underworld development team led by Louis Moresi and based in Melbourne, Australia\nat the University of Melbourne and at Monash University.\n\n*Underworld* and *UWGeodynamics* both provide powerful tools to develop numerical geodynamic models.\nBut their approaches are different: *UWGeodynamics* largely guides users into a way of doing things.\nThe Underworld API provides a series of tools and components (Mesh, Mesh variables, system of equations, functions)\nand leaves the responsibility to arrange those components to the user. The main advantage of the Underworld API is its flexibility.\nThe main inconvenient resides in a somewhat steeper learning curve. *UWGeodynamics* components are\ndesigned to be more natural to non-experimented numerical modellers or people with little knowledge in programming.\nIt is a way to quickly get started and design numerical models. Developing complex models can also be facilitated\nby the *UWGeodynamics* high-level interface as it requires less time and less involvement\nwith the details of the Underworld API.\n\nThe two approaches are complementary and mixing the two approaches is possible and highly encouraged.\n\nNote on versioning\n------------------\n\nSince version 1.0 The Underworld development team has decided to match the *UWGeodynamics* version number with\nthe latest supported version of Underworld. \nUWGeodynamics v2.7 is then supporing Underworld up to version 2.7.\n\nThe third number is used for *UWGeodynamics* only (v2.7.1, v2.7.2 etc.)\n\nThe development branch is based on the current *Underworld* development branch.\n\nThe Current release (**DOI** citable): \n\n`DOI <https://zenodo.org/badge/114189389.svg)](https://zenodo.org/badge/latestdoi/114189389>`_\n\nQuick Start / Testing\n----------------------\n\nWe provide a docker container via binder_.\nThis is a quick solution to get you started and run the examples and tutorials\nwithout installing anything on your machine. That is a good way to see if the\nsoftware can actually be useful to you. \nThe ressource are however limited and you should not try to run model with high resolution.\n3D models can not be run in the binder.\n\nWhere to find documentation?\n----------------------------\n\nThe full documentation is available on `ReadTheDocs <http://uwgeodynamics.readthedocs.org/>`_\n\nAdditional documentation and function specific documentation can be find in the python doctrings.\nYou can acces them in the Jupyter_ notebook by prepending or appending the method, variable or function with ``?``.\n\nInstallation\n-------------\n\nDocker_ installation\n~~~~~~~~~~~~~~~~~~~~\n\nDocker containers provide and easy-way to set up and distribute\napplications. They also provide a safe and consistent environment which\nfacilitate debugging and reproducibility of models. The image we provide\ncontains all the dependencies and configuration files required to run\nUnderworld models. Users can start developping model as soon as they\nhave downloaded the image, independently of the operating system running\non their machine.\n\nWe strongly encourage users to run UWGeodynamics using the docker images\nwe provide on `Docker Hub`_\n\nDifferent version of the `underworldcode/uwgeodynamics` image can be\npulled using a tag:\n\n1. The *latest* tag points to the github master branch and uses the latest\n   *underworld* release.\n2. The *dev* tag points to the github development and uses the development\n   branch of *underworld*.\n3. release tags such as *v2.7.1* points to a specific version.\n\n**Command line**\n\nOnce you have installed docker on your system you can *pull* the\n*UWGeodynamics* official image as follow:\n\n.. code:: bash\n\n  docker pull underworldcode/uwgeodynamics\n\nYou can list all the images available on your system as follow:\n\n.. code:: bash\n\n  docker images\n\nAn image can be deleted as follow:\n\n.. code:: bash\n\n  docker rmi underworldcode/uwgeodynamics\n\nYou can then start a docker container. (An instance of\nan image).\n\n.. code:: bash\n\n  docker run -d \\\n     --name my_container \\\n     -p 8888:8888 \\\n     --mount source=myvol,target=/workspace/user-data \\\n     underworldcode/uwgeodynamics\n\nYou can access the container via your browser at the following\naddress: http://localhost:8888\n\nIt is also possible to ssh into the container as follow:\n\n.. code:: bash\n\n  docker exec -it my_container /bin/bash\n\nYou can list the containers currently existing on your machine by running:\n\n.. code:: bash\n\n  docker ps -a\n\nThe \"a\" means \"all container\". The :code:`docker ps` command only list\nrunning containers.\n\nDocker containers can be stop (so that they do not use CPU or RAM ressource):\n\n.. code:: bash\n\n  docker stop my_container\n\nThey can also be deleted:\n\n.. code:: bash\n\n  docker rm my_container\n\n.. warning::\n\n  It's a good idea to keep track of how many containers have been created as\n  they can rapidly take a lot of space on your machine.\n\nKitematic_\n~~~~~~~~~~\n\nKitematic_ is a program that provides a graphical user interface to\nthe *docker* daemon and to Docker Hub.\nThe software is available for Windows, MacOsx and Linux. Be aware that on\nlinux the installation may differ depending on the distribution you\nare running.\n\n1. Download and Install Kitematic_\n2. Open Kitematic and search for the **uwgeodynamics** image.\n3. Create a container by clicking on the create button.\n\nYou should now have a container appearing on the left side of your\nkitematic window. The first thing to do now is to create a link between\na local directory (A directory on your physical hard drive) and a volume\ndirectory inside the docker container. A volume is a special directory\nthat can be accessed from outside the container. It is the location you\nwill use to save your results.\n\nLocal Installation\n~~~~~~~~~~~~~~~~~~~~\n\nThis is not recommended and involves installing *Underworld* and all\nits dependencies. Docker is highly recommended!!!\n\n**Requirements**\n\n-  Python >= 2.7\n-  A Working version of Underworld2 >=2.6.0 (Please refer to the\n   Underworld documentation)\n-  pint >= 0.8\n\n.. note::\n  The bleeding edge version of *Underworld* (development branch)\n  is now python 3 compatible only.\n  *UWGeodynamics* is python 3 ready and can thus be used with it.\n\n**Install**\n\n**from Pip**\n\nThe UWGeodynamics module can be installed directly from the Python\nPackage Index:\n\n.. code:: bash\n\n  pip install UWGeodynamics\n\n**from sources**\n\nThe module source files are available through github_\n\n.. code:: bash\n\n  git clone https://github.com/underworldcode/UWGeodynamics.git\n\nIt can then be installed globally on your system using\n\n.. code:: bash\n\n  pip install UWGeodynamics/\n\n\nSeeking Support?\n----------------\n\nError messages are useful to understand the source of a problem.\n\nIf you cannot solve the problem by yourself you can ask for help by creating an\nissue on GitHub. If the problem if specific to your model you may be ask to continue the conversation\nthrough email. \n\n*UWGeodynamics* is an open source free software and we cannot guarantee that it\nis free of bugs. Feel free to signal any strange behaviour by raising an issue (see below section\non how to contribute.)\n\n\nContributing\n------------\n\nIf you want to contribute to the UWGeodynamics projects and make it better, your help is very welcome.\n\nSo how can you contribute?\n\n- Found a bug? Submit an issue using the issue tracker here on GitHub\n- Have some suggestions? You can create an issue. Just add [Feature Request] in the title.\n\nIf you have developed some code and you think that it should be included in UWGeodynamics, you\ncan create a Pull Request and We will be happy to review it.\n\nHow to create a Pull Request (PR)\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n#. Create a personal fork of the project on Github.\n\n   You will need a Github Account to do that. Just click on\n   the Fork button at the top right corner of this repository.\n\n#. Clone the fork on your local machine. Your remote repo on Github is called origin.\n\n   :code:`git clone https://github.com/your-github-name/UWGeodynamics`\n\n   replacing \"your-github-name\" with your actual github name...\n\n#. Add the original repository as a remote called upstream.\n\n   :code:`git add remote upstream https://github.com/underworldcode/UWGeodynamics`\n\n#. If you created your fork a while ago be sure to pull upstream changes into your local repository.\n\n   :code:`git pull upstream`\n\n#. Create a new branch to work on! Branch from development!\n\n   :code:`git checkout upstream/development`\n   :code:`git checkout -b newFeature`\n\n#. Implement/fix your feature, comment your code.\n\n#. Follow the code style of the project, including indentation.\n\n#. Include some tests or usage cases\n\n#. Add or change the documentation as needed.\n   The UWGeodynamics documentation is located in the `docs` directory.\n\n#. Push your branch to your fork on Github, the remote origin.\n   :code:`git push origin newFeature`\n\n#. From your fork open a pull request in the correct branch. Target the project's `development`.\n\nAlways write your commit messages in the present tense.\nYour commit message should describe what the commit, when applied, does to the code \u2013 not what you did to the code.\n\n\nThere is no small contribution!\n\n\nCommunity driven\n----------------\n\nThis program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\n\nThis program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for more details.\n\nYou should have received a copy of the GNU Lesser General Public License along with this program.  If not, see <http://www.gnu.org/licenses/lgpl-3.0.en.html>.\n\n\n.. _binder: https://mybinder.org/v2/gh/rbeucher/UWGeodynamics-binder/master\n.. _Underworld: https://github.com/underworldcode/underworld2\n.. _Jupyter: http://jupyter.org/\n.. _Docker: https://www.docker.com\n.. _Docker Hub: https://hub.docker.com/r/underworldcode/uwgeodynamics\n.. _Kitematic: https://kitematic.com/\n.. _github: https://github.com/underworldcode/UWGeodynamics.git\n.. _Pint: https://pint.readthedocs.io/en/latest\n\n\n",
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