{ "info": { "author": "Guy Teichman", "author_email": "guyteichman@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 2 - Pre-Alpha", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "====================================================\nRNAlysis - *C. elegans* RNA sequencing data analysis\n====================================================\n\n\n.. image:: https://img.shields.io/pypi/v/rnalysis.svg\n :target: https://pypi.python.org/pypi/rnalysis\n\nWhat is it?\n-----------\n\nRNAlysis is a python package providing modular analysis pipeline for RNA sequencing data from *C. elegans*.\nThe package includes various filtering methods, data visualisation, clustering analyses, enrichment anslyses and\nexploratory analyses.\n\nRNAlysis allows you to perform filtering and analyses at any order you wish.\nIt has the ability to save or load your progress at any given phase,\nWand document the order of operations you performed in the saved file names.\n\nRNAlysis work with HTCount files from python's HTSeq and with DESeq files from R's DESeq2.\n\n* Documentation: https://guyteichman.github.io/RNAlysis\n\n\nMain Features\n-------------\n\n* Filtering of DESeq and HTCount files by counts, biotype, change direction, significance and more.\n* Normalization of HTCount files\n* Exploratory plots\n* GO, Tissue and Phenotype enrichment analysis\n* Enrichment analysis for custom feature characteristics\n\nDependencies\n------------\n\n* numpy\n* pandas\n* matplotlib\n* seaborn\n* tissue_enrichment_analysis\n* statsmodels\n* sklearn\n\nWhere to get it\n---------------\nUse the following command in the python prompt::\n\n pip install RNAlysis\n\n\nCredits\n-------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n=======\nHistory\n=======\n\n0.1.0 (2019-06-20)\n------------------\n\n* First release on PyPI.\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/GuyTeichman/RNAlysis", "keywords": "RNAlysis", "license": "MIT license", "maintainer": "", "maintainer_email": "", "name": "RNAlysis", "package_url": "https://pypi.org/project/RNAlysis/", "platform": "", "project_url": "https://pypi.org/project/RNAlysis/", "project_urls": { "Homepage": "https://github.com/GuyTeichman/RNAlysis" }, "release_url": "https://pypi.org/project/RNAlysis/1.2.1/", "requires_dist": [ "numpy", "pandas", "matplotlib", "seaborn", "tissue-enrichment-analysis", "statsmodels", "scikit-learn", "ipyparallel" ], "requires_python": "", "summary": "RNAlysis is a python package providing modular analysis pipeline for RNA sequencing data from C. elegans. 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