{ "info": { "author": "Konrad U. F\u00f6rstner, Till Sauerwein", "author_email": "konrad@foerstner.org", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: ISC License (ISCL)", "Operating System :: POSIX", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "About\n-----\n\nREADemption is a pipeline for the computational evaluation of RNA-Seq\ndata. It was originally developed to process dRNA-Seq reads (as\nintroduced by Sharma et al., Nature, 2010) originating from bacterial\nsamples. Meanwhile is has been extended to process data generated in\ndifferent experimental setups and from all domains of life. The\nfunctions which are accessible via a command-line interface cover read\nprocessing and aligning, coverage calculation, gene expression\nquantification, differential gene expression analysis as well as\nvisualization. In order to set up and perform analyses quickly\nREADemption follows the principal of \"convention over configuration\":\nOnce the input files are copied/linked into defined folders no further\nparameters have to be given. Still, READemption's behavior can be\nadapted to specific needs of the user by parameters.\n\nDocumentation\n-------------\n\nDocumentation can be found on\n`here `__.\n\nInstallation\n------------\n\nShort version (if you have all the requirements installed):\n\n::\n\n $ pip install READemption\n\n`Long version `__\nincluding a decryption of the requirements and how do you get them.\n\nLicense\n-------\n\n`ICSL `__ (Internet Systems\nConsortium license ~ simplified BSD license) - see LICENSE.txt\n\nDevelopment\n-----------\n\n- If possible follow the principal of \"convention over configuration\".\n This means input file are copied/linked into a fixed location and the\n resulting files are placed in fixed locations.\n\n- The classes should be path agnostic as far a possible. 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