{ "info": { "author": "Jonathan Friedman", "author_email": "yonatanf@mit.edu", "bugtrack_url": null, "classifiers": [], "description": "**********************************************\nPySurvey: Interactive analysis of survey data \n**********************************************\n\n``PySurvey`` is a `Python `__ package designed to perform interactive analysis of survey data, composed of counts of occurrence of different categories in a collection of samples. \nSpecifically, ``PySurvey`` is developed in the context of genomic surveys, such as 16S surveys, where one studies the occurrence of OTUs across samples.\nThough much of ``PySurvey``'s functionality is not unique to survey data, and equivalent features are implemented in many other packages, ``PySurvey`` is intended to serve as a 'one-stop-shop', and thus attempts to includes all the methods that are commonly used in the analysis of genomic survey data (often by wrapping around other packages), with a sensible choice of default parameters (e.g. distance metrics, etc').\n\n``PySurvey`` is based on the powerful `pandas `__ package which offers rich data structures which are \ntailored and optimized for interactive analysis of large data tables.\n\n--------------------------\n``PySurvey`` Resources\n--------------------------\n- **Documentation:** http://yonatanfriedman.com/docs/survey/index.html\n- **Source Repository:** https://bitbucket.org/yonatanf/pysurvey\n\n\n--------------------------\nKey Features\n--------------------------\n - General utility:\n\t- Metadata support.\n\t- Filtering of samples/components.\n\t- ML and Bayesian estimation of component fractions.\n\n - Exploratory analysis:\n\t- Dimension reduction: PCoA.\n\t- Clustering: hierarchical, gaussian mixture models GMM.\n\t- Compositional correlations via `SparCC `__.\n\t- Plotting: sorted heatmaps, stacked plots, ...\n \n - Ecological theory:\n \t- Sample diversities (alpha diversity).\t\n\t- Rarefaction.\n \t- Rank abundance plots.", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "UNKNOWN", "keywords": null, "license": "MIT", "maintainer": null, "maintainer_email": null, "name": "PySurvey", "package_url": "https://pypi.org/project/PySurvey/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/PySurvey/", "project_urls": { "Download": "UNKNOWN", "Homepage": "UNKNOWN" }, "release_url": "https://pypi.org/project/PySurvey/0.1.2/", "requires_dist": null, "requires_python": null, "summary": "UNKNOWN", "version": "0.1.2" }, "last_serial": 785377, "releases": { "0.1.0": [ { "comment_text": "", "digests": { "md5": "aff67786d7c388eca072234dd81790eb", "sha256": "5ea3f96eaa3ce18e0395c763063496078be6ecb740fc964f2b7ca6d88a578afd" }, "downloads": -1, "filename": "PySurvey-0.1.0.tar.gz", "has_sig": false, "md5_digest": "aff67786d7c388eca072234dd81790eb", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 2831473, "upload_time": "2013-04-02T23:31:15", "url": "https://files.pythonhosted.org/packages/ca/05/719636e4db36ac2ec1558c6af320ce021d89e159ec4e56794e7ab549cbbd/PySurvey-0.1.0.tar.gz" } ], "0.1.1": [ { "comment_text": "", "digests": { "md5": "4e7d65f36d60f5289199b0e86fec7755", "sha256": "1b3410ffc73e3bd73d6567d4997bf47238e9cb0abfe83d1835fb873be29f2800" }, "downloads": -1, "filename": "PySurvey-0.1.1.tar.gz", "has_sig": false, "md5_digest": "4e7d65f36d60f5289199b0e86fec7755", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 2848459, "upload_time": "2013-04-03T02:27:52", "url": "https://files.pythonhosted.org/packages/be/13/d848dac6179f5d3f798c5a1b1dce37df35f05d972bbecf3afdfb8ff712eb/PySurvey-0.1.1.tar.gz" } ], "0.1.2": [ { "comment_text": "", "digests": { "md5": "645bda976fdad5427376eda448cdba47", "sha256": "9e305f3019d597a8ce679557887b165b7eb3942349980edfd29496f656c7dabb" }, "downloads": -1, "filename": "PySurvey-0.1.2.tar.gz", "has_sig": false, "md5_digest": "645bda976fdad5427376eda448cdba47", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3045396, "upload_time": "2013-04-05T23:16:33", "url": "https://files.pythonhosted.org/packages/e4/9a/a59db9e5b04723ad1959166009474e399e653099e40fc0e152ddf27db45d/PySurvey-0.1.2.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "645bda976fdad5427376eda448cdba47", "sha256": "9e305f3019d597a8ce679557887b165b7eb3942349980edfd29496f656c7dabb" }, "downloads": -1, "filename": "PySurvey-0.1.2.tar.gz", "has_sig": false, "md5_digest": "645bda976fdad5427376eda448cdba47", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3045396, "upload_time": "2013-04-05T23:16:33", "url": "https://files.pythonhosted.org/packages/e4/9a/a59db9e5b04723ad1959166009474e399e653099e40fc0e152ddf27db45d/PySurvey-0.1.2.tar.gz" } ] }