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        "description": "PyPhyloGenomics\n===============\n\nA package to work on Phylogenomics.\n\n[[In development.]]\n\nDevelopers\n----------\n\n-   Carlos Pe\u00f1a (email: carlos.pena@utu.fi)\n-   Victor Solis\n-   Pavel Matos\n-   Chris Wheat\n\nInstalling PyPhyloGenomics\n--------------------------\n\nPyPhyloGenomics has been developed in Python v2.7. The installer of\nPyPhyloGenomics will try to download and install all its dependencies as\nwell. To install PyPhyloGenomics use setup.py:\n\n    python setup.py build  \n    python setup.py install\n\nIf it fails you can install the dependencies manually:\n\nInstall dependencies:\n---------------------\n\nrequests:\n\nThe package requests from here. Or try:\n\n    sudo apt-get install python-requests\n\nParallel Python (pp):\n\nIf you are using Ubuntu Linux or related:\n\n    sudo apt-get install python-pp\n\nOtherwise, download the source code and install pp:\n\n    unzip pp-1.6.4.zip\n    cd pp-1.6.4\n    python setup.py install\n\nBioPython:\n\nDownload and install from here. Or:\n\n    sudo apt-get install python-biopython\n\nBeatutifulSoup\n\nDownload and install from here. Or:\n\n    sudo apt-get install python-bs4\n\nMUSCLE\n\nIt is necessary that you install MUSCLE so that PyPhyloGenomics can use\nit to align sequences. Download and install from here.\n\nIf you are using Windows you can download the executable file\nmuscle3.8.31_i86win32.exe and save it in your Python folder (C:27) as\nmuscle.exe.\n\nBLAST\n\nDownload and install the BLAST+ executables from the NCBI website. Or\ntry:\n\n    sudo apt-get install ncbi-blast+\n\nfastx-toolkit\n\nDownload and install from here. Or:\n\n    sudo apt-get install fastx-toolkit\n\nReading PyPhyloGenomics' documentation:\n---------------------------------------\n\nRead the online documentation here:\nhttp://carlosp420.github.io/PyPhyloGenomics/\n\nOr, after installling do the following:\n\n    cd doc  \n    make html\n\nThen open the file _build/html/index.html in your web-browser.\n\nReproduce our analysis:\n-----------------------\n\nYou can reproduce all the steps detailed in our [Getting started with\nPyPhylogenomics] guide. Just use the command line in the same folder as\nthe Makefile and type make ???",
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