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        "description": "# PyGEtoolbox - Gene expression toolbox in Python\n\n## Objective\n\n\n## Installation\n\n    python setup.py install\n\n## Features\n\n- Downloading GEO DataSets from Gene Expression Omnibus (GEO) ([see example](examples/download_SOFT_format.py))\n- Downloading RAW format from GEO ([see example](examples/download_RAW_data.py))\n- Downloading CEL files from GEO ([see example](examples/download_CEL_files.py))\n- Parsing SOFT format ([see example](examples/parse_SOFT_format.py))\n- Affymetrix probe set ID to gene id and gene description conversion ([see example](examples/affy_probe_set_id_to_gene_id.py))\n- Differentially Expressed genes analysis (TODO)\n\n## CODE EXAMPLES:\n\n```python\nfrom PyGEtoolbox import *\n\n#downloading GSE from GEO\nseries = Download()\nseries.download_SOFT_format(\"GSE105008\") \n\n#downloading GDS from GEO\ndatasets = Download()\ndatasets.download_SOFT_format(\"GDS2003\") \n\n#downloading CEL file\ncel = Download()\ncel.download_CEL_file(\"GSM270781\")\n\n#downloading RAW data\nraw_data = Download()\nraw_data.download_RAW_data(\"GSE41657\")\n```\n\n```python\nfrom PyGEtoolbox import *\n\na = Process_SOFT_format(\"../SOFT_format/GSE10714_family.soft.gz\")  # path to the data\na.extract_metadata()\na.print_data()\na.extract_all_samples()\n```\n\n## Bugs\n\nThis project will be regularly updated during the 2019. Testing this package is more than welcome. \nPlease report all bugs, suggestions and features that could be added.",
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