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"info": {
"author": "Dong Zhang",
"author_email": "dongzhang0725@gmail.com",
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"classifiers": [
"License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Topic :: Software Development :: User Interfaces"
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"description": "# PhyloSuite\nPhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. It combines the functions of two previous tools: MitoTool (https://github.com/dongzhang0725/MitoTool) and BioSuite (https://github.com/dongzhang0725/BioSuite).\n\nThe interface and the main functions of PhyloSuite. \n\n\n\nThe workflow diagram of PhyloSuite. \n\n\n\nThe summary of flowchart and references of used programs. \n\n\n\n## Homepage\n\nhttps://dongzhang0725.github.io\n\n## Installation\n\n### 1. Install compiled PhyloSuite \n\nInstallers for all platforms can be downloaded from https://github.com/dongzhang0725/PhyloSuite/releases.\n\n Download Now \n\n#### 1.1. Windows\nWindows 7, 8 and 10 are supported, just double click the `PhyloSuite_xxx_win_setup.exe` to install, and run \u201cPhyloSuite.exe\u201d file after the installation. If the installation fails, download `PhyloSuite_xxx_Win.rar`, unzip it, and run PhyloSuite directly from this folder.\n\n#### 1.2. Mac OSX & Linux\nUnzip `PhyloSuite_xxx_Mac.zip/PhyloSuite_xxx_Linux.tar.gz` to anywhere you like, and double click \u201cPhyloSuite\u201d (in PhyloSuite folder) to start, or use the following command: \n\n```\ncd path/to/PhyloSuite\n./PhyloSuite\n ```\nIf you encounter an error of \"permission denied\", try to use the following command:\n\n```\nchmod -R 755 path/to/PhyloSuite(folder)\n ```\n\nNote that both 64 bit and 32 bit Windows is supported (Windows 7 and above), whereas only 64 bit has been tested in Linux (Ubuntu 14.04.1 and above) and Mac OSX (macOS Sierra version 10.12.3 and above).\n\n### 2. Install using pip\n\nFirst, Python (version higher than 3.6) should be installed and added to the environment variable in your computer. Then open the terminal and type:\n\n```\npip install PhyloSuite\n```\n\nIt will take some time to install. If it installs successfully, PhyloSuite will be automatically added to the environment variables. Then open the terminal again and type:\n ```\n PhyloSuite\n ```\n\nIf the above `pip` command failed to install PhyloSuite, you can use compiled PhyloSuite (see `section 1`) or find and download the source codes here (https://pypi.org/project/PhyloSuite/#files or https://github.com/dongzhang0725/PhyloSuite), and install it manually.\n\n## Examples\n\nhttps://raw.githubusercontent.com/dongzhang0725/PhyloSuite/master/example.zip\n\n## Bug report\n\nhttps://github.com/dongzhang0725/PhyloSuite/issues or send email to dongzhang0725@gmail.com.\n\n## Citation\nZhang, D., Gao, F., Li, W.X., Jakovli\u0107, I., Zou, H., Zhang, J., and Wang, G.T. (2018). PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. bioRxiv, doi: 10.1101/489088. (Download as: RIS XML ENW)",
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