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        "author": "Grzegorz Bokota",
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            "Development Status :: 3 - Alpha",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: Implementation :: CPython",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "# PartSeg\n[![Build Status](https://travis-ci.com/4DNucleome/PartSeg.svg?branch=master)](https://travis-ci.com/4DNucleome/PartSeg)\n[![PyPI version](https://badge.fury.io/py/PartSeg.svg)](https://badge.fury.io/py/PartSeg)\n[![Documentation Status](https://readthedocs.org/projects/partseg/badge/?version=latest)](https://partseg.readthedocs.io/en/latest/?badge=latest)\n[![Build Status](https://dev.azure.com/PartSeg/PartSeg/_apis/build/status/4DNucleome.PartSeg?branchName=master)](https://dev.azure.com/PartSeg/PartSeg/_build/latest?definitionId=1&branchName=master)\n[![DOI](https://zenodo.org/badge/166421141.svg)](https://zenodo.org/badge/latestdoi/166421141)\n\nPartSeg is gui and library for segmentation algorithms.\n\nThis application is designed to help biologist with segmentation \nbased on threshold and connected components \n\n![interface](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/analysis_gui.png)\n\n## Tutorials\n* Tutorial: **Chromosome 1 (as gui)** [link](https://4dnucleome.cent.uw.edu.pl/PartSeg/tutorials/tutorial_chromosome_1/)\n* Data for chromosome 1 tutorial [link](https://4dnucleome.cent.uw.edu.pl/PartSeg/Downloads/PartSeg_samples.zip)\n* Tutorial: **Different neuron types (as library)** [link](https://4dnucleome.cent.uw.edu.pl/PartSeg/tutorials/tutorial_diferrent_neurons/)\n\n## Installing\n* From binaries:\n  * [Windows](https://4dnucleome.cent.uw.edu.pl/PartSeg/Downloads/PartSeg-0.9.3.post5-windows.zip) (build on Windows 10)\n  * [Linux](https://4dnucleome.cent.uw.edu.pl/PartSeg/Downloads/PartSeg-0.9.3.post5-linux.zip) (build on Ubuntu 18.04)\n  * [MacOS](https://4dnucleome.cent.uw.edu.pl/PartSeg/Downloads/PartSeg-0.9.3.post5-macos.zip) (build on MacOS Mojave) \n* With pip (on linux you need to install `numpy` and `cython` earlier) \n    * From pypi: `pip install PartSeg`\n    * From repository: `pip install git+https://github.com/4DNucleome/PartSeg.git`\n\n\n## Running \nIf you download binaries look for `PartSeg_exec` file inside the `PartSeg` folder \n\nIf you install from repository or from pip you cat run it with `PartSeg` command or `python -m PartSeg`. \nFirst option do not work on Windows. \n\nPartSeg export few commandline options: \n- `--no_report` - disable reporting errors to authors\n- `--no_dialog` - disable reporting errors to authors and showing error dialog. Use only when running from terminal.\n- `segmentation_analysis` - skip launcher and start analysis gui\n- `segmentation` - skip launcher and start segmentation gui \n\n\n## Additional remarks:\nCurrent version of PartSeg use `tifffile` package to read `*.tiff` files. Because newer version is easy to install\nonly on Windows. If you install it manually with imagecodecs it should work.    \n\n\n## Save Format\nSaved project are tar files compressed with gzip or bz2 \n\nMetadata are saved in data.json file (in json format)\nimages/mask are saved as *.npy (numpy array format)\n\n\n## Interface\nLauncher. Chose program that you will launch:     \n![launcher](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/launcher.png)  \nMain window of Segmentation Analysis:  \n![interface](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/analysis_gui.png)  \nMain window of Segmentation Analysis with view on measurement result:  \n![interface](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/analysis_gui2.png)  \nWindow for creating set of measurements:   \n![statistics](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/statisitcs.png)  \nMain window of Mask Segmentation:  \n![mask interface](https://raw.githubusercontent.com/4DNucleome/PartSeg/master/images/mask_gui.png)  \n\n\n\n## Laboratory\nLaboratory of functional and structural genomics\nhttp://4dnucleome.cent.uw.edu.pl/\n\n\n\n\n",
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