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        "description": "pims: Python Image Sequence\n===========================\n\n|build status|\n\nWhat Problem Does PIMS Solve?\n-----------------------------\n\nScientific video can be packaged in various ways: familiar video formats\nlike .AVI and .MOV, folders full of numbered images, or \"stacks\" of TIFF\nimages. Each of these requires a separate Python module. And, once\nloaded, they have different methods for **accessing individual images,\nlooping through the images in bulk, accessing a specific range, or\ndealing with multidimensional files**. PIMS can do all of these using a\nconsistent interface, handling the differences between different inputs\ninvisibly.\n\nFormats readable by pims include: \\* Directories or zipfiles of still\nimages (most formats, including TIFF, JPEG, PNG, BMP), and TIFF stacks\n\\* Microscope images supported by the `Bio-formats\nproject <https://www.openmicroscopy.org/site/support/bio-formats5.1/supported-formats.html>`__,\nincluding Leica, Nikon, Olympus, and Zeiss formats. Requires separate\ninstallation; see below. \\* Movie formats and codecs supported by\nffmpeg, including AVI, QuickTime MOV, and H.264 (MP4). May require\nseparate installation; see below. \\* CINE files from Vision Research\ncameras \\* SEQ files from NorPix StreamPix software\n\nPIMS is based on readers by: \\*\n`scikit-image <http://scikit-image.org/>`__ \\*\n`matplotlib <http://matplotlib.org/>`__ \\*\n`scipy <http://www.scipy.org/>`__ \\*\n`ffmpeg <https://www.ffmpeg.org/>`__ and\n`PyAV <http://mikeboers.github.io/PyAV/>`__ (video formats such as AVI,\nMOV) \\* `jpype <http://jpype.readthedocs.org/en/latest/>`__ (interface\nwith Bio-formats) \\*\n`Pillow <http://pillow.readthedocs.org/en/latest/>`__ (improved TIFF\nsupport) \\* `libtiff <https://code.google.com/p/pylibtiff/>`__\n(alternative TIFF support) \\*\n`tifffile <http://www.lfd.uci.edu/~gohlke/code/tifffile.py.html>`__\n(alterative TIFF support) \\*\n`pims\\_nd2 <https://github.com/soft-matter/pims_nd2>`__ (improved Nikon\n.nd2 support) \\* `imageio <https://imageio.github.io>`__ (a\nmulti-purpose reader package that reads and writes many formats) \\*\n`moviepy <http://zulko.github.io/moviepy>`__ (a Python module that\nsupports video editing)\n\nExamples & Documentation\n------------------------\n\nEverything is demonstrated in `this IPython\nnotebook <http://nbviewer.ipython.org/github/soft-matter/pims/blob/master/examples/loading%20video%20frames.ipynb>`__.\n\n`**Read the documentation** <http://soft-matter.github.io/pims/>`__ for\ninstallation instructions, examples, and further reference.\n\nCore Contributors\n-----------------\n\n-  **Daniel Allan** founding contributor, slicing and iteration logic,\n   basic readers, display tools\n-  **Thomas Caswell** major refactor, abstract base class\n-  **Casper van der Wel** bioformats readers, display tools\n-  **Thomas Dimiduk** filetype-detecting dispatch logic\n\nSupport\n-------\n\nThis package was developed in part by Daniel Allan, as part of his PhD\nthesis work on microrheology in Robert L. Leheny's group at Johns\nHopkins University in Baltimore, MD. The work was supported by the\nNational Science Foundation under grant number CBET-1033985. Later work\nwas supported by Brookhaven National Lab. Dan can be reached at\ndallan@bnl.gov.\n\nThis package was developed in part by Thomas A Caswell as part of his\nPhD thesis work in Sidney R Nagel's and Margaret L Gardel's groups at\nthe University of Chicago, Chicago IL. This work was supported in part\nby NSF Grant DMR-1105145 and NSF-MRSEC DMR-0820054. Later work was\nsupported by Brookhaven National Lab. Tom can be reached at\ntcaswell@gmail.com.\n\nThis package was developed in part by Casper van der Wel, as part of his\nPhD thesis work in Daniela Kraft's group at the Huygens-Kamerlingh-Onnes\nlaboratory, Institute of Physics, Leiden University, The Netherlands.\nThis work was supported by the Netherlands Organisation for Scientific\nResearch (NWO/OCW).\n\n.. |build status| image:: https://travis-ci.org/soft-matter/pims.png?branch=master\n   :target: https://travis-ci.org/soft-matter/pims\n\n\n",
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