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        "description": "This package implements the simplest form of a Differential Expression test.\nIt just fits two linear models, assuming Normally distributed residuals, to\neach gene. These are assumed to be nested, and a likelihood ratio test is\nthen performed to compare the models.\n\nThe test might have low power and give noisy results, but it shouldn't be\nbiased. With many (i.e. hundreds of) samples it should work all right.\n\nThis can serve as a baseline comparison with more sophisticated tests.\n\n## Faux fold changes\n\nThe package also has methods for creating input fold-change controlled\nfake conditions in data using ERCC spike-ins. This performs systematic\nrenaming of spike-ins in randomized conditions. To avoid creating unrealistic\nlevels of fold change, input concentration is used to limit possible renaming.\n\nThis assumes expression measures used are comparable between different\nsequences. Thus these should optimally account for length and other sequence\nfeatures before creating faux fold changes.\n",
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