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    "info": {
        "author": "Luis Pedro Coelho",
        "author_email": "luis@luispedro.org",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "Operating System :: OS Independent",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Software Development :: Libraries",
            "Topic :: Software Development :: Libraries :: Python Modules"
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        "description": "# NGLessPy: NGLess as a Python Embedded Language\n\nThis is a variation of [NGLess](http://ngless.embl.de) as an embedded language\nin Python, thus enabling processing of next generation data through a Python\nAPI. See the example below.\n\n[![Build Status](https://travis-ci.org/luispedro/nglesspy.svg?branch=master)](https://travis-ci.org/luispedro/nglesspy)\n[![MIT licensed](https://img.shields.io/badge/license-MIT-blue.svg)](https://raw.githubusercontent.com/hyperium/hyper/master/LICENSE)\n[![Join the chat at https://gitter.im/luispedro/ngless](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/luispedro/ngless?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)\n\nThis is **very experimental** and can change at any time. Please [get in\ntouch](mailto:coelho@embl.de) if you want to use it in your work. For\nquestions, you can also use the [ngless mailing\nlist](https://groups.google.com/forum/#!forum/ngless).\n\n## Dependencies\n\n- [requests](http://docs.python-requests.org/)\n- [NGLess](http://ngless.embl.de)\n\nNGLesspy can auto-install ngless if it needs to.\n\nNGLesspy is compatible with Python 2.7 and 3.4+.\n\n## Example\n\n\nInside the [bin/](https://github.com/luispedro/nglesspy/tree/master/bin)\ndirectory, you will find several simple scripts exposing NGLess functionality\nas command line tools. These are also simple examples of how NGLessPy can be\nused.\n\nSee the [tutorial](http://ngless.embl.de/nglesspy.html) for a more thorough\nexplanation of what is going on in the example below.\n\n```python\n    from ngless import NGLess\n\n    sc = NGLess.NGLess('0.8')\n\n    sc.import_('mocat', '0.0')\n    e = sc.env\n\n    e.sample = sc.load_mocat_sample_('testing')\n\n    @sc.preprocess_(e.sample, using='r')\n    def proc(bk):\n        bk.r = sc.substrim_(bk.r, min_quality=25)\n\n    e.mapped = sc.map_(e.sample, reference='hg19')\n    e.mapped = sc.select_(e.mapped, keep_if=['{mapped}'])\n\n    sc.write_(e.mapped, ofile='ofile.sam')\n\n    sc.run()\n```\n\nThis is equivalent to the NGLess script\n\n\n    ngless '0.8'\n    import 'mocat' version '0.0'\n\n    sample = load_mocat_sample('testing')\n\n    preprocess_(sample) using='r':\n        r = substrim(r, min_quality=25)\n\n    mapped = map(sample, reference='hg19')\n    mapped = select(mapped, keep_if=[{mapped}])\n\n    write(mapped, ofile='ofile.sam')",
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