{ "info": { "author": "Magnus Marcin, Pawlowski Marcin, Bujnicki Janusz M", "author_email": "magnus@genesilico.pl", "bugtrack_url": null, "classifiers": [ "Environment :: Console", "Intended Audience :: Science/Research", "Operating System :: OS Independent", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "Welcome to MetaLocGramN\r\n---------------\r\n\r\nThe MetaLocGramN is a method for subcellular localization prediction of Gram-negative proteins. \r\nRead more: http://iimcb.genesilico.pl/MetaLocGramN/home\r\n\r\nHow does MetaLocGramN work?\r\n============\r\n\r\nThe MetaLocGramN is a gateway to a number of primary prediction methods (various types: signal peptide, beta-barrel, transmembrane helices and subcellular localization predictors).\r\n\r\nThe MetaLocGramN integrates the primary methods and based on their outputs provides overall consensus prediction. \r\n\r\nRequirements\r\n============\r\n\r\n* suds = 0.4\r\n\r\nInstallation\r\n============\r\n\r\nInstall it with pip (or easy_install)::\r\n\r\n\tpip install MetaLocGramN\r\n\r\nHow to start?\r\n============\r\n\r\nIf you are really lazy try:\r\n \r\n $ ipython\r\n \r\n\tIn [1]: from MetaLocGramN import *\r\n\tIn [2]: run_example()\r\n\t# job_id: 1X820N\r\n\t# status: queue\r\n\t# status: primary prediction::in progress\r\n\t# status: primary prediction::in progress\r\n\t# status: primary prediction::done\r\n\t# status: consenus::done\r\n\t# status: done\r\n\textracellular,47.541,0.0,0.0,0.0,52.459,\r\n\tprimary methods: CELLO,cytoplasmic,0.6138,0.036,0.1346,0.0612,0.1546,PSLpred,extracellular,0.2,0.531,PSORTb3,unknown,0.2,0.2,0.2,0.2,0.2,SosuiGramN,cytoplasmic\r\n\tIn [3]: run_example?\r\n\t# to get help!\r\n\tIn [4]: run_example??\r\n\t# to get even bigger help!\r\n\r\nif you want to find out more, see test.py inside the pkg.\r\n\r\n\timport MetaLocGramN\r\n\timport time\r\n\r\n\tif __name__ == \"__main__\":\r\n\t mlgn = MetaLocGramN.MLGN()\r\n\r\n\t seq = \"\"\">fasta\r\n\t MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGI\r\n\t NYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFVRQKNTKYK\r\n\t \"\"\"\r\n\t mlgn.predict(seq)\r\n\t print '# job_id:', mlgn.get_job_id()\r\n\t status = ''\r\n\t while True:\r\n\t status = mlgn.get_status()\r\n\t print '# status:', status\r\n\t if status == 'done':\r\n\t break\r\n\t time.sleep(5)\r\n\t print mlgn.get_result()\r\n\r\nYou should get something like:\r\n\r\n\tpython test.py\r\n\t# job_id: K6Q10Q\r\n\t# status: queue\r\n\t# status: queue\r\n\t# status: primary prediction::in progress\r\n\t# status: primary prediction::in progress\r\n\t# status: primary prediction::done\r\n\t# status: done\r\n\textracellular,47.541,0.0,0.0,0.0,52.459,\r\n\tprimary methods: CELLO,cytoplasmic,0.6138,0.036,0.1346,0.0612,0.1546,PSLpred,extracellular,0.2,0.531,PSORTb3,unknown,0.2,0.2,0.2,0.2,0.2,SosuiGramN,cytoplasmic\r\n\r\nAuthors\r\n==================================================\r\n\r\nMarcin Magnus,\r\nMarcin Pawlowski,\r\nJanusz M. Bujnicki\r\n\r\nhttp://iimcb.genesilico.pl/\r\n\r\n\r\nHappy predictions!\r\n==================================================\r\n\r\nMarcin Magnus magnus@genesilico.pl", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://iimcb.genesilico.pl/MetaLocGramN/home", "keywords": "bioinformatics,subcellular localization,prediction,gram-negative,sequence,analysis", "license": "GPLv3", "maintainer": "", "maintainer_email": "", "name": "MetaLocGramN", "package_url": "https://pypi.org/project/MetaLocGramN/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/MetaLocGramN/", "project_urls": { "Download": "UNKNOWN", "Homepage": "http://iimcb.genesilico.pl/MetaLocGramN/home" }, "release_url": "https://pypi.org/project/MetaLocGramN/0.99/", "requires_dist": null, "requires_python": null, "summary": "MetaLocGramN: a method for subcellular localization prediction of Gram-negative proteins.", "version": "0.99" }, "last_serial": 784699, "releases": { "0.99": [ { "comment_text": "", "digests": { "md5": "77128861a2060429c7593423b522de0e", "sha256": "35bb38ad97577b5d24a3ecfef8c1cf063c38005425afc492152a2351c202a264" }, "downloads": -1, "filename": "MetaLocGramN-0.99.tar.gz", "has_sig": false, "md5_digest": "77128861a2060429c7593423b522de0e", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 14801, "upload_time": "2012-10-01T22:53:46", "url": "https://files.pythonhosted.org/packages/18/37/0a4f60aa3b1dbf71feff9814fb21baa3d1ecd613a471dd36ac5497c8c2ea/MetaLocGramN-0.99.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "77128861a2060429c7593423b522de0e", "sha256": "35bb38ad97577b5d24a3ecfef8c1cf063c38005425afc492152a2351c202a264" }, "downloads": -1, "filename": "MetaLocGramN-0.99.tar.gz", "has_sig": false, "md5_digest": "77128861a2060429c7593423b522de0e", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 14801, "upload_time": "2012-10-01T22:53:46", "url": "https://files.pythonhosted.org/packages/18/37/0a4f60aa3b1dbf71feff9814fb21baa3d1ecd613a471dd36ac5497c8c2ea/MetaLocGramN-0.99.tar.gz" } ] }