{ "info": { "author": "Michael Imelfort", "author_email": "mike@mikeimelfort.com", "bugtrack_url": null, "classifiers": [], "description": ". \n. 888b d888 .d8888b. .d8888b. 888 d8P \n. 8888b d8888 d88P Y88b d88P Y88b 888 d8P \n. 88888b.d88888 888 888 888 888 d8P \n. 888Y88888P888 888 .d88P 888d88K \n. 888 Y888P 888 888 .od888P\" 8888888b \n. 888 Y8P 888 888 888 d88P\" 888 Y88b \n. 888 \" 888 Y88b d88P 888\" 888 Y88b \n. 888 888 \"Y8888P\" 888888888 888 Y88b \n. \n\nOverview\n=========\n\nMetaChecka is a metagenomic QA toolset. It uses sets of reference\ngenes to test for bin completeness and contamination\n\nInstallation\n=========\n\nShould be as simple as\n\n pip install MetaChecka2000\n\nData preparation and running MetaChecka2000\n=========\n\nMetaChecka2000 expects to see a folder containing one or more multiple fasta \nfiles containg assembled and binned contigs, one file for each bin.\n\nYou need to:\n\n 1. Extract genes from the contigs\n 2. Use hmmer to match these genes to an existing database\n 3. Do some counting\n\nUse: metachecka2000 -h for more detailed help\n\nLicence and referencing\n=========\n\nProject home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000\n\nThis software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.\n\nCopyright \u00a9 2012 Michael Imelfort, Connor Skennerton. 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