{ "info": { "author": "Pierre-Yves Chibon", "author_email": "pingou@pingoured.fr", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Environment :: Console", "Intended Audience :: End Users/Desktop", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX", "Programming Language :: Python :: 2.6", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Software Development :: Libraries" ], "description": "MQ\u00b2\n===\n\n:Author: Pierre-Yves Chibon , \n\n\nA simple python module to process output from QTL mapping tool including\n`MapQTL `_ and\n`R/qtl `_.\n\nAssuming one QTL per linkage group and using the LOD threshold set by the user.\nThis application extracts all the QTLs detected by the QTL mapping tool, it\nfinds the closest marker and finally put the number of QTLs found for each\nmarker on the genetic map.\n\nThis approach quickly allows you to find potential QTL hotspot in your\ndataset. This is particularly usefull for large QTL analysis on a\nlarge number of traits.\n\nGet this project:\n-----------------\n\nSources: https://github.com/PBR/MQ2\n\nRelease: http://pypi.python.org/packages/source/M/MQ2/MQ2-1.0.0.tar.gz\n\nRun it on the web at: http://www.plantbreeding.nl/mq2\n\n\nDependencies:\n-------------\n\n- `straight.plugin `_\n- `xlrd `_ (only required by the Excel\n plugin, if not present only this plugin will be affected)\n\n\nDocumentation:\n--------------\n\nThe project contains some documentation on how to install, run and contribute\nto this project.\n\nThe documentation can be found:\n- online at: https://github.com/PBR/MQ2/tree/master/doc\n- as pdf at: https://github.com/PBR/MQ2/tree/master/MQ2_doc.pdf?raw=true\n\n\nRun the project:\n----------------\n\nTo run the project, simply run the ``MQ2`` script provided.\n\nSee ``MQ2 --help`` or ``MQ2 -h`` for the different argument available.\n\n\nTesting:\n--------\n\nThis project contains unit-tests allowing you to check if the code\nbehaves as it should.\n\nTo run them, two ways, either::\n\n ./runtest.sh\n\nor::\n\n python setup.py nosetest\n\n.. note:: You will need to have ``python-coverage`` installed to run the test\n via ``runtest.sh``\n\nLicense:\n--------\n\nThis project is licensed GPLv3+.\n", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/PBR/MQ2/", "keywords": null, "license": "GPLv3+", "maintainer": null, "maintainer_email": null, "name": "MQ2", "package_url": "https://pypi.org/project/MQ2/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/MQ2/", "project_urls": { "Download": "UNKNOWN", "Homepage": "https://github.com/PBR/MQ2/" }, "release_url": "https://pypi.org/project/MQ2/1.1.0/", "requires_dist": null, "requires_python": null, "summary": "MQ\u00b2 aims at extracting and find QTLs from MapQTL output", "version": "1.1.0" }, 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