{ "info": { "author": "", "author_email": "", "bugtrack_url": null, "classifiers": [ "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "MOODS-python 1.9.4.1\n====================\n\nMotif Occurrence Detection Suite\n\nhttps://www.cs.helsinki.fi/group/pssmfind/\n\n\nInstalling from PyPi\n--------------------\n\nThe quickest way to install MOODS is using pip:\n\n(a) Install the module to your local Python library path:\n\n pip install --user MOODS-python\n\n(b) Install the module for all users:\n\n sudo pip install MOODS-python\n\nInstalling the MOODS package from PyPi installs the `moods-dna.py` script to\nyour Python executable directory. Test it by running:\n\n moods-dna.py --help\n\n(Note that this assumes that the appropriate Python executable directory is in\nyour path. For example, if you install the package with --user, you can do this\nwith\n\n PATH=\"$PATH:`python -m site --user-base`/bin\"\n\nif it doesn't work otherwise.)\n\n\nInstalling from Source\n----------------------\n\nAlternatively, you can install MOODS from the source package, for example if you\ndon't have your pip configured or you just want a quick throwaway install.\n\n(a) If you don't want to bother installing MOODS, you can compile the extensions\n in place and create a symlink under `scripts/`:\n\n python setup.py build_ext --inplace\n cd scripts\n ln -s ../MOODS/\n\n(b) Install the module to your local Python library path:\n\n python setup.py install --user\n\n(c) Install the module for all users:\n\n sudo python setup.py install\n\nYou can test MOODS by running the `moods-dna.py` script with\nthe example data provided with the package:\n\n cd scripts/\n python moods-dna.py -m example-data/matrices/*.{pfm,adm} -s example-data/seq/chr1-5k-55k.fa -p 0.0001\n python moods-dna.py --help\n\n\nDocumentation\n-------------\n\nDocumentation on GitHub wiki: https://github.com/jhkorhonen/MOODS/wiki\n\n\nCopyright and Licence\n---------------------\n\nCopyright (C) 2009 by Petri J Martinm\u00e4ki, Janne Korhonen, Pasi Rastas\n\nThis program is free software: you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation, either version 3 of the License, or\n(at your option) any later version, or under the terms of the Biopython\nLicense.", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://www.cs.helsinki.fi/group/pssmfind/", "keywords": "PWM,PSSM,motif scan", "license": "GPLv3 / Biopython license", "maintainer": "Janne H. 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