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        "author": "Fabian Gaertner",
        "author_email": "fabian@bioinf.uni-leipzig.de",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Natural Language :: English",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "Linear Superbubble Detector\n===========================\n\n.. image:: https://raw.githubusercontent.com/Fabianexe/Superbubble/master/logo.png\n\nIntroduction\n------------\nThis project gives the reference implementation of the Linear Superbubble Dector (LSD).\n\n.. _`NetworkX`: https://networkx.github.io\n.. _`NetworkX can load`: https://networkx.github.io/documentation/stable/reference/readwrite/index.html\n\nFeatures\n--------\n- Detect superbubbles in linear time\n- Uses `NetworkX`_  as graph library\n- Can load plenty file formats (everything that `NetworkX can load`_ )\n- Have different ways to report the superbubbles\n- Simple and clean code\n- Simple to understand and reimplement\n\nDocumentation\n=============\nThe documentation can be found at:\nhttps://fabianexe.github.io/Superbubble\n\nInstallation\n------------\nThe simples way to install is using pip::\n\n   pip install LSD-Bubble\n\n.. _`setuptools`: https://pypi.python.org/pypi/setuptools\n\nYou can also download the source from https://github.com/Fabianexe/Superbubble and run the make script to install the package.\nThese needs that `setuptools`_ are installed.\n\nUsage\n-----\nThe programms needs only a path to a graph file to work and the algorithm that it should use:\n\n   lsd d *path*\n\nIf you want other detection algorithm try:\n\n   lsd p *path*\n\nor\n\n   lsd o *path*\n\nIf as input format not edgelist is used give the format with the -f parameter\n\n   lsd d *path* -f gml\n\nIf you want a different reporting format use -r\n\n   lsd d *path* -r count\n\nIf you want not to detect superbubbles but week superbubbles use --week:\n\n   lsd d *path* --week\n\n\n\n",
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        "keywords": "graph,superbubble,\ufeffde Bruijn graph,\ufeffGenome assembly,\ufeffLinear time algorithm",
        "license": "BSD 3-Clause",
        "maintainer": "",
        "maintainer_email": "",
        "name": "LSD-Bubble",
        "package_url": "https://pypi.org/project/LSD-Bubble/",
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        "summary": "Detect all superbubbles in a graph.",
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