{ "info": { "author": "Allis Tauri", "author_email": "allista@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "Operating System :: POSIX", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "**GetIsolationSources** is a small command line utility that, given fasta files containing GenBank IDs in sequence descriptions, generates a per sequence list of isolation sources and their distribution (i.e. number of sequences per isolation source).\n\nIt searches for IDs using regular expressions in accordance with [NCBI specifications](http://www.ncbi.nlm.nih.gov/Sequin/acc.html), so the format of description strings does not matter.\n\nTo obtain needed information it uses automated Entrez queries, so you need a working Internet connection to perform the analysis. Queries are made in accordance with NCBI load-balance regulations, therefore processing several thousand records may take several minutes or even longer.\n\nIt is distributed as a source code supporting python setup tools.\n\n**GetIsolationSources uses [BioPython](http://biopython.org/wiki/Main_Page).** So if you're using source code distribution, the latest version of [BioPython](http://biopython.org/wiki/Main_Page) should be installed.\n\n[**Downaloads**](https://github.com/allista/GetIsolationSource/releases)\n\n***\n\n**GetIsolationSources** by [**Allis Tauri**](https://github.com/allista) is licensed under the [MIT](https://github.com/allista/GetIsolationSources/blob/master/LICENSE) license.", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/allista/GetIsolationSources", "keywords": "bioinformatics,ncbi,entrez", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "GetIsolationSources", "package_url": "https://pypi.org/project/GetIsolationSources/", "platform": "", "project_url": "https://pypi.org/project/GetIsolationSources/", "project_urls": { "Homepage": "https://github.com/allista/GetIsolationSources" }, "release_url": "https://pypi.org/project/GetIsolationSources/1.5.2/", "requires_dist": null, "requires_python": "", "summary": "Retrieves isolation sources from NCBI given the set of sequences with specified accession numbers. Both nucleotide and protein accessions are accepted.", "version": "1.5.2" }, "last_serial": 3015152, "releases": { "1.5.1.2": [ { "comment_text": "", "digests": { "md5": "75681ce77e81c5898273bd01a6f09760", "sha256": "52b06e0f5264722f77d0eeb5e8222b2e295efbf61ab1a64919e12ad595b5f6e8" }, "downloads": -1, "filename": "GetIsolationSources-1.5.1.2.tar.gz", "has_sig": true, "md5_digest": "75681ce77e81c5898273bd01a6f09760", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 7402, "upload_time": "2017-07-11T15:43:47", "url": "https://files.pythonhosted.org/packages/ff/47/d394f16e74decedb2400b8635933230e8bb49832971fa781607c83a60718/GetIsolationSources-1.5.1.2.tar.gz" } ], "1.5.2": [ { "comment_text": "", "digests": { "md5": "bdfb55f0d3c2fe6f52ade0d0312b722b", "sha256": "71f781178896a74d95d68f9ce4e314cc5bebee9e6b6aa966391ac94ea0d5a33b" }, "downloads": -1, "filename": "GetIsolationSources-1.5.2.tar.gz", "has_sig": true, "md5_digest": "bdfb55f0d3c2fe6f52ade0d0312b722b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 7444, "upload_time": "2017-07-11T16:44:24", "url": "https://files.pythonhosted.org/packages/51/66/7a6adcb29a2f39619317a37e792845e2fc840576cf13a2261087c909dc6e/GetIsolationSources-1.5.2.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "bdfb55f0d3c2fe6f52ade0d0312b722b", "sha256": "71f781178896a74d95d68f9ce4e314cc5bebee9e6b6aa966391ac94ea0d5a33b" }, "downloads": -1, "filename": "GetIsolationSources-1.5.2.tar.gz", "has_sig": true, "md5_digest": "bdfb55f0d3c2fe6f52ade0d0312b722b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 7444, "upload_time": "2017-07-11T16:44:24", "url": "https://files.pythonhosted.org/packages/51/66/7a6adcb29a2f39619317a37e792845e2fc840576cf13a2261087c909dc6e/GetIsolationSources-1.5.2.tar.gz" } ] }