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        "author": "Wibowo Arindrarto",
        "author_email": "bow@bow.web.id",
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        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Topic :: Scientific/Engineering :: Visualization",
            "Topic :: Utilities"
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        "description": "FsnViz\n======\n\n|ci| |coverage| |pypi|\n\n.. |ci| image:: https://travis-ci.org/bow/fsnviz.svg?branch=master\n    :target: https://travis-ci.org/bow/fsnviz\n\n.. |coverage| image:: https://codecov.io/gh/bow/fsnviz/branch/master/graph/badge.svg\n    :target: https://codecov.io/gh/bow/fsnviz\n\n.. |pypi| image:: https://badge.fury.io/py/FsnViz.svg\n    :target: http://badge.fury.io/py/fsnviz\n\n\nFsnViz is a Python tool for plotting RNA-seq fusion events using Circos plots.\nIt parses outputs of gene fusion finding tools and creates Circos plots out of\nit.\n\nCurrently it accepts outputs of the following gene fusion finding tool:\n\n* `STAR-Fusion <https://github.com/STAR-Fusion/STAR-Fusion>`_ hits table\n  (``star-fusion``)\n* `FusionCatcher <https://github.com/ndaniel/fusioncatcher>`_ final table\n  (``fusioncatcher``)\n\n\nRequirements\n------------\n\nFsnViz is tested on the following Python versions:\n    * 3.5\n    * 3.6\n\nand the following Circos versions:\n    * 0.69-2\n\nOther Circos versions may be used but they are not guaranteed to work.\n\nInstallation\n------------\n\nYou can download the latest version via pip:\n\n    $ pip install fsnviz\n\nCircos needs to be installed separately.\n\n\nUsage\n-----\n\nFsnViz needs only a result file of the gene fusion finding tool:\n\n    $ fsnviz star-fusion /path/to/result/file\n\nWith the invocation above, it will create the Circos plot as an SVG image\ncalled ``fsnviz.svg`` in the current directory. You can adjust the output\nbehavior using some flags such as:\n\n    * The ``--output-dir`` flag to set the output directory. If it does not\n      exist, it will be created for you.\n    * The ``--base-name`` flag to set the base name of the Circos plot\n      (the default is ``fsnviz``). Filename extensions are added accordingly.\n    * The ``--karyotype`` flag to set the Circos reference karyotype.\n      Currently only ``human.hg19`` and ``human.hg38`` are available.\n\nFor a complete list, check out the help via ``fsnviz --help``.\n\n\nCredits\n-------\n\n* Initial circos templates were based on the Circos templates of\n  `viewFusion <https://github.com/riverlee/viewFusion>`_, written by Jiang Li.\n\n\nLicense\n-------\n\nFsnViz is BSD-licensed. Refer to the ``LICENSE`` file for the full license.\n\n\nChangelog\n=========\n\n\nVersions 0.3\n------------\n\nRelease 0.3.0\n^^^^^^^^^^^^^\n\n`release date: 14 August 2017`\n\n* Adds a new `--circos-conf` CLI flag which allows for custom circos config file.\n* Updates the default template with bigger fonts\n\n\nVersions 0.2\n------------\n\nRelease 0.2.0\n^^^^^^^^^^^^^\n\n`release date: 30 January 2016`\n\n* Adds support for plotting FusionCatcher output.\n\n\nVersions 0.1\n------------\n\nRelease 0.1.0\n^^^^^^^^^^^^^\n\n`release date: 20 April 2016`\n\n* First release.\n* Support for plotting STAR-fusion output on human.hg19 and human.hg38.",
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        "keywords": "rnaseq fusion circos plot bioinformatics visualization",
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        "name": "FsnViz",
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