{ "info": { "author": "Michael Gruenstaeudl, PhD", "author_email": "m.gruenstaeudl@fu-berlin.de", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "License :: OSI Approved :: BSD License", "Programming Language :: Python :: 2.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "*EMBL2checklists*\n=================\n\n[![Build Status](https://ci.appveyor.com/api/projects/status/github/michaelgruenstaeudl/EMBL2checklists?branch=master&svg=true)](https://ci.appveyor.com/api/projects/status/github/michaelgruenstaeudl/EMBL2checklists)\n[![Build Status](https://travis-ci.com/michaelgruenstaeudl/EMBL2checklists.svg?branch=master)](https://travis-ci.com/michaelgruenstaeudl/EMBL2checklists)\n[![PyPI status](https://img.shields.io/pypi/status/EMBL2checklists.svg)](https://pypi.python.org/pypi/EMBL2checklists/)\n[![PyPI pyversions](https://img.shields.io/pypi/pyversions/EMBL2checklists.svg)](https://pypi.python.org/pypi/EMBL2checklists/)\n[![PyPI version shields.io](https://img.shields.io/pypi/v/EMBL2checklists.svg)](https://pypi.python.org/pypi/EMBL2checklists/)\n[![PyPI license](https://img.shields.io/pypi/l/EMBL2checklists.svg)](https://pypi.python.org/pypi/EMBL2checklists/)\n\nEMBL2checklists converts EMBL- or GenBank-formatted flat files to submission-ready checklists (i.e., tab-separated spreadsheets) for submission to [ENA](http://www.ebi.ac.uk/ena) via the interactive [Webin submission system](https://www.ebi.ac.uk/ena/submit/sra/#home).\n\n\n\n\n\n## INPUT, OUTPUT AND PREREQUISITES\n* **Input**: EMBL- or GenBank-formatted flatfile\n* **Output**: tab-separated spreadsheet (\"checklist\")\n* **Prerequisites**: Input flatfiles must have the DNA marker name (e.g., \"matK\", \"ITS\") as qualifier value for any of the defined key_features (\"gene\", \"note\", \"product\" or \"standard_name\").\n\n\n## EXAMPLE USAGE\n\n### On Linux / MacOS\n\n#### Commandline Interface\n```\n$ EMBL2checklists_CLI \\\n -i example/input/example_trnK_matK.embl \\\n -o example/temp/example_trnK_matK.tsv \\\n -c trnK_matK \\\n -e no\n```\n#### GUI Interface\n```\n$ EMBL2checklists_GUI\n```\n\n### On Windows\n\n#### GUI Interface\nSimply double-click the file `EMBL2checklist_GUI.exe` as generated during the installation (see below).\n\n\n![](images/EMBL2checklist_GUI.png)\n\n\n## INSTALLATION\nFirst, please be sure to have [Python 2.7 installed](https://www.python.org/downloads/) on your system. 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