{ "info": { "author": "Max Tomlinson / Ben Readhead", "author_email": "max.tomlinson@mssm.edu", "bugtrack_url": null, "classifiers": [], "description": "To use CGEA:\nInstall: pip install CGEA\n\nCGEA offers two primary classes:\ndrugListCGEA(druglist, saveAs = \"json\", sort = 'up', outputDir = None, prefix = 'CGEAResults', \n\t\t\t data = {}, numWorkers = cpu_count(), verbose = False, numPermutations = 1000):\ngeneListCGEA(upgenes, downgenes, saveAs = \"json\", sort = 'up', outputDir = None, prefix = 'CGEAResults', \n\t\t\t data = {}, numWorkers = cpu_count(), verbose = False, numPermutations = 1000):\n\narguments:\n\tupgenes = list of up regulated genes in your gene set.\n\tdowngenes = list of down regulated genes in your gene set. Input None if you don't discriminate between up and down regulation.\n\tdruglist = list of drugs in quuery set.\n\toutputDir: if you want to have the function save the outputs for you, supply an output directory here.\n\tprefix: all the file outputs will have this as a prefix if outputDir is defined\n\tasync: set this to True if you want the program to run asynchronously\n\tnumPermutations: increasing this number will increase accuracy at the cost of speed\n\tverbose: set this to True to have the program give status updates about its progress\n\tnumWorkers: how many cores to use\n\tdata: you can change what data is used by the program. 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