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        "description": "# BaseMountRetrieve\nPackage for retrieving files from BaseMount in the output style of a local MiSeq run.\n\n### Output Directory Sample\n```\nProject\n\u251c\u2500\u2500 20180714_WGS_M01308\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 Config\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 Data\n\u2502\u00a0\u00a0 \u2502\u00a0\u00a0 \u2514\u2500\u2500 Intensities\n\u2502\u00a0\u00a0 \u2502\u00a0\u00a0     \u2514\u2500\u2500 BaseCalls\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 Images\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 InterOp\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 Logs\n\u2502\u00a0\u00a0 \u251c\u2500\u2500 Recipes\n\u2502\u00a0\u00a0 \u2514\u2500\u2500 Thumbnail_Images\n\u2514\u2500\u2500 20181102_WGS_M01308\n    \u251c\u2500\u2500 Config\n    \u251c\u2500\u2500 Data\n    \u2502\u00a0\u00a0 \u2514\u2500\u2500 Intensities\n    \u2502\u00a0\u00a0     \u2514\u2500\u2500 BaseCalls\n    \u251c\u2500\u2500 Images\n    \u251c\u2500\u2500 InterOp\n    \u251c\u2500\u2500 Logs\n    \u251c\u2500\u2500 Recipes\n    \u2514\u2500\u2500 Thumbnail_Images\n```\n\n### Requirements\n- [BaseMount](https://basemount.basespace.illumina.com/) (Confirmed supported version: Illumina BaseMount v0.15.96.2154)\n- Python 3.6\n\n### Installation\n`pip install basemountretrieve`\n\n### Usage\n```\nUsage: basemountretrieve [OPTIONS]\n\n  BaseMountRetrieve will tap into the mounted BaseMount filesystem and\n  retrieve all of the runs for a given project in the output style of a\n  local MiSeq run.\n\nOptions:\n  -p, --project-dir PATH      Path to the directory on BaseMount for a\n                              particular project. e.g.\n                              basemount/Projects/[your project].\n  -e, --experiment-name TEXT  Searches BaseMount for the name of a\n                              run/experiment and attempts to retrieve its\n                              contents. Must be used along with the\n                              --basemount-dir parameter. Cannot be used\n                              alongside the --project-dir flag.\n  -b, --basemount-dir PATH    Path to root directory for BaseMount, e.g.\n                              ~/basemount/. Must be supplied alongside\n                              --experiment-name parameter.\n  -o, --out-dir PATH          Directory to dump all runs for project.\n                              [required]\n  -r, --rename                Use this flag to automatically re-name the R1\n                              and R2 files to just include the Sample ID.\n  -v, --verbose               Use this flag to enable more verbose output.\n  --version                   Use this flag to print the version and exit.\n  --help                      Show this message and exit.\n```",
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