{ "info": { "author": "Janine George", "author_email": "janine.george@uclouvain.be", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: BSD License", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "[![License](https://img.shields.io/badge/License-BSD%203--Clause-blue.svg)](https://github.com/JaGeo/AtomicContributions/blob/master/LICENSE) [![Zenodo](https://zenodo.org/badge/110969681.svg)](https://zenodo.org/badge/latestdoi/110969681) [![Build Status](https://travis-ci.org/JaGeo/AtomicContributions.svg?branch=master)](https://travis-ci.org/JaGeo/AtomicContributions)\n\n# AtomicContributions\nThis python package can visualize the contribution of each atom to the phonon modes at the Gamma point. To do so, you need [```Phonopy```](https://github.com/atztogo/phonopy) and [```VASP```](https://www.vasp.at/). \n
\n\nWhat to cite\n------------\nPlease cite the following:\n1. [J. George, R. Wang, U. Englert, R. Dronskowski, *J. Chem. Phys.* **2017**, *147*, 074112.](https://doi.org/10.1063/1.4985886) \n2. Janine George, & Richard Dronskowski (2018), AtomicContributions (Version 1.3). Zenodo. [http://doi.org/10.5281/zenodo.2597239](http://doi.org/10.5281/zenodo.2597239) ([Bibtex](http://doi.org/10.5281/zenodo.2597239/export/hx)). \n\nOf course, also [```VASP```](https://www.vasp.at/) and [```Phonopy```](https://github.com/atztogo/phonopy).\n\nIntallation\n-----------\nYou can simply install this package via ```pip install AtomicContributions-JaGeo```. \n\n\nTo use this package you need to install [```Phonopy```](https://github.com/atztogo/phonopy) correctly. Furthermore, ```numpy``` and ```matplotlib``` are required. Also, the python path should be exported correctly. \n\nHow to\n--------\n1. Perform a phonon calculation with Phonopy and VASP (finite displacements or DFPT) ([More information on this procedure](https://atztogo.github.io/phonopy/procedure.html))\n2. Generate the ```FORCE_SETS``` or ```FORCE_CONSTANTS``` file\n3. If neccessary calculate the BORN charges ([More information on this procedure](https://atztogo.github.io/phonopy/procedure.html)) and the ```BORN``` file\n4. Download this repository, export the Python path correctly\n5. Copy an example script, adapt the names of the files, the supercell size (the one you used for the phonon calculation!) and include the rotational matrix to arrive at the primitive cell if necessary. \n6. Run the script\n\nResult\n------\n\n![You will arrive at a nice plot visualizing all atomic contributions to modes.](https://github.com/JaGeo/AtomicContributions/blob/master/Doc/allmodes.png)\n\n\nTodo\n--------\n1. Other functionalities\n2. Include error handling. Not included so far. Thus, be careful.\n\nInformation about the Author\n--------\n\n- J. George (RWTH Aachen University)\n- PI during the development of the code: [R. Dronskowski, RWTH Aachen University](http://www.ssc.rwth-aachen.de/)\n\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/JaGeo/AtomicContributions", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "AtomicContributions-JaGeo", "package_url": "https://pypi.org/project/AtomicContributions-JaGeo/", "platform": "", "project_url": "https://pypi.org/project/AtomicContributions-JaGeo/", "project_urls": { "Homepage": "https://github.com/JaGeo/AtomicContributions" }, "release_url": "https://pypi.org/project/AtomicContributions-JaGeo/1.5.0/", "requires_dist": [ "numpy (>=1.14.3)", "phonopy (>=2.1.1)", "matplotlib (>=3.0.2)" ], "requires_python": "", "summary": "Package to display atomic contributions to modes", "version": "1.5.0" }, "last_serial": 5359393, "releases": { "1.5.0": [ { "comment_text": "", "digests": { "md5": "b292a67827a5241f571ca3313edeb84d", "sha256": "168e56a001e3a23b60909e455acebdf58daaf1f6185bb8b1b751cd1d2b49c51b" }, "downloads": -1, "filename": "AtomicContributions_JaGeo-1.5.0-py3-none-any.whl", "has_sig": false, "md5_digest": "b292a67827a5241f571ca3313edeb84d", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 8072, "upload_time": "2019-06-04T19:54:35", "url": "https://files.pythonhosted.org/packages/ad/bf/5b15ed799dd3d2baca050193cd5492bbd8daf4a07601e75b87fbabbd656b/AtomicContributions_JaGeo-1.5.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "2adb6e2d99defc584ccc15d0e0fc3819", "sha256": "2488439d0f00c5b0d1b408ba7498015d0bff9075ef2efd6c17b337db8636ac0a" }, "downloads": -1, "filename": "AtomicContributions_JaGeo-1.5.0.tar.gz", "has_sig": false, "md5_digest": "2adb6e2d99defc584ccc15d0e0fc3819", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 6438, "upload_time": "2019-06-04T19:54:36", "url": "https://files.pythonhosted.org/packages/3b/a3/373bb421772756cb1466f4dbfaad83d089a2580e7e50df36b367eb35c13e/AtomicContributions_JaGeo-1.5.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "b292a67827a5241f571ca3313edeb84d", "sha256": "168e56a001e3a23b60909e455acebdf58daaf1f6185bb8b1b751cd1d2b49c51b" }, "downloads": -1, "filename": "AtomicContributions_JaGeo-1.5.0-py3-none-any.whl", "has_sig": false, "md5_digest": "b292a67827a5241f571ca3313edeb84d", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 8072, "upload_time": "2019-06-04T19:54:35", "url": "https://files.pythonhosted.org/packages/ad/bf/5b15ed799dd3d2baca050193cd5492bbd8daf4a07601e75b87fbabbd656b/AtomicContributions_JaGeo-1.5.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "2adb6e2d99defc584ccc15d0e0fc3819", "sha256": "2488439d0f00c5b0d1b408ba7498015d0bff9075ef2efd6c17b337db8636ac0a" }, "downloads": -1, "filename": "AtomicContributions_JaGeo-1.5.0.tar.gz", "has_sig": false, "md5_digest": "2adb6e2d99defc584ccc15d0e0fc3819", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 6438, "upload_time": "2019-06-04T19:54:36", "url": "https://files.pythonhosted.org/packages/3b/a3/373bb421772756cb1466f4dbfaad83d089a2580e7e50df36b367eb35c13e/AtomicContributions_JaGeo-1.5.0.tar.gz" } ] }