{
    "info": {
        "author": "Michael Defoin-Platel",
        "author_email": "michael.defoinplatel@gmail.com",
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        "description": "===========\n   AIGO\n===========\n\nAIGO is a python library for the Analysis and \nthe Inter-comparison of Gene Ontology functional annotations.\nsee (http://code.google.com/p/aigo).\n\nCreated by Michael Defoin-Platel on 21/02/2010.\nCopyright (c) 2010. All rights reserved.\n\nTypical usage could look like this::\n\n    #!/usr/bin/env python\n\n    from AIGO import logger\n\n    from AIGO.ReferenceSet import RefSet\n    from AIGO.FunctionalAnnotation import FuncAnnot\n    from AIGO.go.OBO import readGOoboXML\n\n    from AIGO.Analyse import AnalyseFA\n    from AIGO.Report import ReportFA\n\n    from AIGO.utils.Execute import batchExecute\n\n    refSet = RefSet(organism=\"platypus\", fileName=\"platypus.refSet\", refType=\"Text\")\n    G = readGOoboXML(\"go_daily-termdb.obo-xml\")\n    FA = FuncAnnot(\"platypusProject\", refSet, G, organism=\"platypus\")\n    FA.read(\"platypus.gaf\", \"GAF\") \n\n    analyseFA = AnalyseFA()\n\n    analyseFA.largestSet([FA])\n    logger.info(\"Largest sets of annotations:\")\n    logger.info(\"\\t%d for %s\" % (FA['largestSet']['All_aspects_of_GO'], FA.name))\n\n    batchList=[\"coverage\",  \"richness\", \"numberAnnot\", \"redundancy\", \"specificity\", \"informationContent\"]\n    batchExecute(batchList, analyseFA, [FA])\n\n    reportFA = ReportFA(outDir=None, name=\"platypusProject\", organism=\"platypus\")\n    reportFA.printStatistics([FA] ,batchList)\n\nTests\n=====\n\nRun testAIGO.py in the tests directory\n\n\nRequirements\n==============\n\nRunning AIGO on windows\n-------------------------\n* The 2.6.5 Python interpreter for Windows page http://www.python.org/download.\n* GTK+ runtime (recommend bundle), PyGTK, PyCairo? and PyGObject http://www.pygtk.org/downloads.html\n* BioPython? http://biopython.org/wiki/Download\n* NumPy? http://sourceforge.net/projects/numpy/files/NumPy\n* matplotlib http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0\n* xlwt http://pypi.python.org/pypi/xlwt \n\nOptional :\n* wxPython http://www.wxpython.org/download.php#binaries\n* psyco http://sourceforge.net/projects/psyco/files\n* RPy http://sourceforge.net/projects/rpy/files\n\n\nContributors\n============\n* Michael Defoin-Platel\n* Matthew Hindle",
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        "license": "LICENSE.txt",
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